Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CTK_RS14915 Genome accession   NZ_CP014170
Coordinates   3057143..3057586 (-) Length   147 a.a.
NCBI ID   WP_017895885.1    Uniprot ID   W6NIE4
Organism   Clostridium tyrobutyricum strain KCTC 5387     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3052143..3062586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTK_RS14890 (CTK_C30380) rplI 3052922..3053365 (-) 444 WP_017752022.1 50S ribosomal protein L9 -
  CTK_RS14895 (CTK_C30390) - 3053365..3055350 (-) 1986 WP_017895883.1 DHH family phosphoesterase -
  CTK_RS14900 (CTK_C30400) - 3055369..3056340 (-) 972 WP_017895884.1 DUF2232 domain-containing protein -
  CTK_RS14905 (CTK_C30410) - 3056352..3056666 (-) 315 WP_017752019.1 MazG-like family protein -
  CTK_RS14910 (CTK_C30420) rpsR 3056858..3057115 (-) 258 WP_017752018.1 30S ribosomal protein S18 -
  CTK_RS14915 (CTK_C30430) ssbA 3057143..3057586 (-) 444 WP_017895885.1 single-stranded DNA-binding protein Machinery gene
  CTK_RS14920 (CTK_C30440) rpsF 3057599..3057886 (-) 288 WP_017752016.1 30S ribosomal protein S6 -
  CTK_RS14925 (CTK_C30450) - 3057982..3058185 (-) 204 WP_017752015.1 DUF951 domain-containing protein -
  CTK_RS14930 (CTK_C30460) - 3058189..3059076 (-) 888 WP_017752014.1 mechanosensitive ion channel family protein -
  CTK_RS14935 (CTK_C30470) - 3059082..3059342 (-) 261 WP_017752013.1 DUF3343 domain-containing protein -
  CTK_RS14940 (CTK_C30480) ytvI 3059585..3060640 (+) 1056 WP_017752012.1 sporulation integral membrane protein YtvI -
  CTK_RS14945 (CTK_C30490) yyaC 3060717..3061310 (+) 594 WP_017752011.1 spore protease YyaC -
  CTK_RS14950 (CTK_C30500) - 3061294..3061566 (-) 273 WP_017752010.1 YkuS family protein -
  CTK_RS14955 (CTK_C30510) - 3061620..3062129 (-) 510 WP_017752009.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16436.13 Da        Isoelectric Point: 4.7719

>NTDB_id=169218 CTK_RS14915 WP_017895885.1 3057143..3057586(-) (ssbA) [Clostridium tyrobutyricum strain KCTC 5387]
MNRVVLIGRLTKDPELRFTPGNGTAVTTFTIAVDRRFSKNGQREADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRN
YEAKDGTRRYVTEVIADEVQFLEWGEKSQGSSNNMNSQSNNFGNTQSFDENNYGEDITPVDDGDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=169218 CTK_RS14915 WP_017895885.1 3057143..3057586(-) (ssbA) [Clostridium tyrobutyricum strain KCTC 5387]
TTGAACAGAGTTGTTTTAATTGGAAGATTGACCAAAGATCCTGAGTTGAGATTTACTCCTGGAAATGGTACAGCAGTTAC
CACCTTTACTATAGCCGTTGATAGAAGATTTTCTAAAAATGGACAGAGAGAAGCCGATTTTATACCTGTAGTTGTATGGG
GAAAACAAGCTGAGTCTACAGCAAATTATATGAGTAAAGGTAAACTCATAGGAATTAGCGGAAGAATCCAAACTAGAAAT
TATGAAGCTAAAGACGGTACGAGAAGATATGTTACAGAGGTTATTGCAGATGAGGTTCAATTCTTGGAATGGGGCGAAAA
ATCTCAAGGATCATCTAATAATATGAATTCTCAATCTAATAATTTTGGAAATACTCAAAGCTTTGATGAAAATAATTATG
GAGAGGATATAACACCAGTTGATGATGGTGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6NIE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.701

100

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

100

0.517
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.282

100

0.429
  ssbB/cilA Streptococcus mitis NCTC 12261

40.94

100

0.415
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.268

100

0.408
  ssbB/cilA Streptococcus pneumoniae D39

39.597

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.597

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

39.597

100

0.401
  ssbB/cilA Streptococcus mitis SK321

39.597

100

0.401
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

70.068

0.374
  ssb Vibrio cholerae strain A1552

30.337

100

0.367
  ssbA Streptococcus mutans UA159

47.368

77.551

0.367

Multiple sequence alignment