Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AWM80_RS08795 Genome accession   NZ_CP014166
Coordinates   1669385..1670119 (+) Length   244 a.a.
NCBI ID   WP_060757498.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CU1050     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664385..1675119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWM80_RS08775 (AWM80_08780) trmFO 1665078..1666385 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AWM80_RS08780 (AWM80_08785) xerC 1666453..1667367 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  AWM80_RS08785 (AWM80_08790) clpQ 1667380..1667925 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  AWM80_RS08790 (AWM80_08795) hslU 1667942..1669345 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  AWM80_RS08795 (AWM80_08800) codY 1669385..1670119 (+) 735 WP_060757498.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AWM80_RS08800 (AWM80_08805) flgB 1670499..1670888 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  AWM80_RS08805 (AWM80_08810) flgC 1670888..1671340 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  AWM80_RS08810 (AWM80_08815) fliE 1671351..1671671 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  AWM80_RS08815 (AWM80_08820) fliF 1671717..1673327 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  AWM80_RS08820 (AWM80_08825) fliG 1673340..1674356 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  AWM80_RS08825 (AWM80_08830) fliH 1674349..1675101 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27077.97 Da        Isoelectric Point: 4.5982

>NTDB_id=169122 AWM80_RS08795 WP_060757498.1 1669385..1670119(+) (codY) [Bacillus subtilis subsp. subtilis strain CU1050]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQPEEYTKNLFNVPETSSNLDINSEY
TAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAEEIEEEARSKAVVQMA
ISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELEN
LKSH

Nucleotide


Download         Length: 735 bp        

>NTDB_id=169122 AWM80_RS08795 WP_060757498.1 1669385..1670119(+) (codY) [Bacillus subtilis subsp. subtilis strain CU1050]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAACCTGAAGAATATACGAAAAATCTGTTTAATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATAT
ACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCAAGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAG
ATTAGGAACACTTATTCTTTCGCGTTTACAAGATCAATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAG
TTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAAGAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCT
ATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAATTGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGT
TGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTG
TTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAAT
CTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-163)

CodY helix-turn-helix domain (HTH_CodY)

(183-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.208

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

45.49

100

0.475

Multiple sequence alignment