Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL468_RS17575 Genome accession   NZ_CP014134
Coordinates   1770140..1770865 (+) Length   241 a.a.
NCBI ID   WP_104974609.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1765140..1775865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS17560 (AL468_08975) - 1766289..1768610 (+) 2322 WP_104974607.1 Tex family protein -
  AL468_RS17565 (AL468_08980) - 1768699..1769163 (-) 465 WP_005379316.1 hypothetical protein -
  AL468_RS17570 (AL468_08985) bioH 1769288..1770055 (-) 768 WP_168187832.1 pimeloyl-ACP methyl ester esterase BioH -
  AL468_RS17575 (AL468_08990) comF 1770140..1770865 (+) 726 WP_104974609.1 ComF family protein Machinery gene
  AL468_RS17580 (AL468_08995) nfuA 1770963..1771547 (+) 585 WP_005394968.1 Fe-S biogenesis protein NfuA -
  AL468_RS17585 (AL468_09000) nudE 1771724..1772293 (+) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  AL468_RS17590 (AL468_09005) cysQ 1772338..1773165 (+) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL468_RS17595 (AL468_09010) - 1773466..1774227 (-) 762 WP_054867791.1 type II secretion system protein N -
  AL468_RS17600 (AL468_09015) - 1774229..1774720 (-) 492 WP_085343383.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27805.96 Da        Isoelectric Point: 9.0482

>NTDB_id=168567 AL468_RS17575 WP_104974609.1 1770140..1770865(+) (comF) [Vibrio diabolicus strain FDAARGOS_99]
MLSHQWQNIMHRVLSSQCGLCRFPIQTPNHTHALRWCEHCLQHLTPIKRCQRCGLTLQKEEMNTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAQQLQTNFDA
KVFRRVKLAQSQRGNTKASREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=168567 AL468_RS17575 WP_104974609.1 1770140..1770865(+) (comF) [Vibrio diabolicus strain FDAARGOS_99]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGTCTGTGTCGATTCCCGATTCAAAC
ACCAAACCACACGCATGCTCTGCGTTGGTGTGAGCACTGTTTACAGCACCTAACTCCAATCAAGCGATGCCAACGTTGCG
GTTTAACGTTACAGAAAGAGGAGATGAATACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGA
CTATATACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGAGGCTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCACAGCAATTACAGACCAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCTCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

73.77

100

0.747
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment