Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AL528_RS01015 Genome accession   NZ_CP014113
Coordinates   202711..202959 (-) Length   82 a.a.
NCBI ID   WP_047502888.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_168     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 197711..207959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL528_RS01000 (AL528_00990) - 199302..200366 (+) 1065 WP_061050365.1 alcohol dehydrogenase catalytic domain-containing protein -
  AL528_RS01005 (AL528_00995) - 200393..201634 (+) 1242 WP_011303811.1 MFS transporter -
  AL528_RS01010 (AL528_01000) - 201674..202456 (+) 783 WP_002484122.1 DeoR/GlpR family DNA-binding transcription regulator -
  AL528_RS01015 (AL528_01005) rcrQ 202711..202959 (-) 249 WP_047502888.1 hypothetical protein Regulator
  AL528_RS01020 (AL528_01010) - 203178..204029 (-) 852 WP_225791761.1 sugar kinase -
  AL528_RS01025 (AL528_01015) eda 204033..204650 (-) 618 WP_061050366.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  AL528_RS01030 (AL528_01020) - 204788..205732 (+) 945 WP_061050367.1 LacI family DNA-binding transcriptional regulator -
  AL528_RS01035 (AL528_01025) cidR 206577..207452 (-) 876 WP_002484126.1 cidABC operon transcriptional activator CidR -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 9527.83 Da        Isoelectric Point: 6.0673

>NTDB_id=168399 AL528_RS01015 WP_047502888.1 202711..202959(-) (rcrQ) [Staphylococcus saprophyticus strain FDAARGOS_168]
MFSTSALDIETENKIQKAFKKLSEHRTSLIIAHRLSTIKDVDRIIFIKDGQILEEGSHDVLMQHDGQYKQLYLSQFSDVE
TF

Nucleotide


Download         Length: 249 bp        

>NTDB_id=168399 AL528_RS01015 WP_047502888.1 202711..202959(-) (rcrQ) [Staphylococcus saprophyticus strain FDAARGOS_168]
TTGTTTTCGACGAGTGCGCTAGATATTGAAACAGAAAATAAAATTCAAAAAGCGTTTAAAAAACTTTCAGAACACAGAAC
GTCTTTAATTATTGCACATCGATTATCGACGATTAAAGATGTCGACCGTATTATCTTTATTAAAGATGGTCAAATTTTAG
AAGAAGGAAGTCATGATGTATTAATGCAGCATGATGGTCAATATAAACAACTTTACTTATCTCAATTCTCAGATGTTGAA
ACGTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.632

92.683

0.488

Multiple sequence alignment