Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL552_RS00845 Genome accession   NZ_CP014094
Coordinates   21592..22317 (-) Length   241 a.a.
NCBI ID   WP_104968950.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16592..27317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS00820 (AL552_08985) - 17741..18232 (+) 492 WP_085343383.1 type II secretion system protein M -
  AL552_RS00825 (AL552_08990) - 18234..18995 (+) 762 WP_006741793.1 type II secretion system protein N -
  AL552_RS00830 (AL552_08995) cysQ 19296..20123 (-) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL552_RS00835 (AL552_09000) nudE 20164..20733 (-) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  AL552_RS00840 (AL552_09005) nfuA 20910..21494 (-) 585 WP_005394968.1 Fe-S biogenesis protein NfuA -
  AL552_RS00845 (AL552_09010) comF 21592..22317 (-) 726 WP_104968950.1 ComF family protein Machinery gene
  AL552_RS00850 (AL552_09015) bioH 22402..23169 (+) 768 WP_006741796.1 pimeloyl-ACP methyl ester esterase BioH -
  AL552_RS00855 (AL552_09020) - 23294..23758 (+) 465 WP_005379316.1 hypothetical protein -
  AL552_RS00860 (AL552_09025) - 23863..26184 (-) 2322 WP_005394964.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27882.04 Da        Isoelectric Point: 9.0514

>NTDB_id=168309 AL552_RS00845 WP_104968950.1 21592..22317(-) (comF) [Vibrio diabolicus strain FDAARGOS_96]
MLSHHWQNIMHRMLSSQCGLCRFPIQTPNHTHALRWCEHCLQHLTPIKRCQRCGLTLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTQQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAQQLQTNFDA
KVFRRVRLAQSQRGNTKASREQNLKDAFVLNKRPQSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=168309 AL552_RS00845 WP_104968950.1 21592..22317(-) (comF) [Vibrio diabolicus strain FDAARGOS_96]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCATGTTGAGCAGTCAATGCGGTCTGTGTCGGTTCCCGATTCAAAC
ACCAAACCACACGCATGCTCTGCGTTGGTGTGAGCACTGTTTACAACACCTAACTCCAATCAAGCGATGCCAACGTTGCG
GTTTAACGTTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGCCTTTCAGAACCACCGCCATGGCAAAGA
CTATATACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCATGGAGAGTCTTGGCATGT
AAAAGCACTAACCCAGCAACTGGCGCAGCGCATTACAACACCAGCTCCAATCATTACCAGTGTACCGCTGCACTGGCAGC
GCTACCTACGCCGGGGATTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCCAGCAATTGCAGACCAATTTCGACGCG
AAGGTCTTTCGCCGGGTCAGACTCGCCCAATCACAGCGCGGCAATACCAAAGCGAGCCGTGAACAAAATCTAAAAGACGC
GTTTGTTCTCAATAAGCGACCGCAATCTTCCCATGTTGCCATCGTCGATGATGTGGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.541

100

0.734
  comF Vibrio cholerae strain A1552

48.75

99.585

0.485

Multiple sequence alignment