Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BSBS38_RS06440 Genome accession   NZ_CP017314
Coordinates   1242737..1243654 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain BS38     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1237737..1248654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSBS38_RS06425 (BSBS38_01299) trpS 1238317..1239309 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  BSBS38_RS06430 (BSBS38_01300) oppA 1240053..1241690 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  BSBS38_RS06435 (BSBS38_01301) oppB 1241798..1242733 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  BSBS38_RS06440 (BSBS38_01302) amiD 1242737..1243654 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  BSBS38_RS06445 (BSBS38_01303) oppD 1243659..1244735 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  BSBS38_RS06450 (BSBS38_01304) oppF 1244737..1245654 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  BSBS38_RS06455 (BSBS38_01305) yjbB 1245762..1246979 (+) 1218 WP_080478438.1 MFS transporter -
  BSBS38_RS06460 (BSBS38_01306) yjbC 1247144..1247722 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  BSBS38_RS06465 (BSBS38_01307) spx 1247903..1248298 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=168204 BSBS38_RS06440 WP_003232954.1 1242737..1243654(+) (amiD) [Bacillus subtilis strain BS38]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=168204 BSBS38_RS06440 WP_003232954.1 1242737..1243654(+) (amiD) [Bacillus subtilis strain BS38]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCGAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGTGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364