Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AL494_RS11225 Genome accession   NZ_CP014057
Coordinates   2275288..2275536 (-) Length   82 a.a.
NCBI ID   WP_047502888.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain FDAARGOS_137     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2270288..2280536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL494_RS11210 (AL494_11095) - 2271881..2272945 (+) 1065 WP_048787193.1 alcohol dehydrogenase catalytic domain-containing protein -
  AL494_RS11215 (AL494_11100) - 2272972..2274213 (+) 1242 WP_011303811.1 MFS transporter -
  AL494_RS11220 (AL494_11105) - 2274253..2275035 (+) 783 WP_048787192.1 DeoR/GlpR family DNA-binding transcription regulator -
  AL494_RS11225 (AL494_11110) rcrQ 2275288..2275536 (-) 249 WP_047502888.1 hypothetical protein Regulator
  AL494_RS11230 (AL494_11115) - 2275755..2276606 (-) 852 WP_231097704.1 sugar kinase -
  AL494_RS13135 - 2276610..2276774 (-) 165 WP_369081318.1 hypothetical protein -
  AL494_RS13020 (AL494_11120) - 2276813..2277265 (-) 453 WP_250647427.1 2-dehydro-3-deoxyphosphogluconate aldolase -
  AL494_RS11240 (AL494_11125) - 2277368..2278312 (+) 945 WP_048787690.1 LacI family DNA-binding transcriptional regulator -
  AL494_RS11245 (AL494_11130) cidR 2279159..2280034 (-) 876 WP_002484126.1 cidABC operon transcriptional activator CidR -

Sequence

Protein


Download         Length: 82 a.a.        Molecular weight: 9527.83 Da        Isoelectric Point: 6.0673

>NTDB_id=168176 AL494_RS11225 WP_047502888.1 2275288..2275536(-) (rcrQ) [Staphylococcus saprophyticus strain FDAARGOS_137]
MFSTSALDIETENKIQKAFKKLSEHRTSLIIAHRLSTIKDVDRIIFIKDGQILEEGSHDVLMQHDGQYKQLYLSQFSDVE
TF

Nucleotide


Download         Length: 249 bp        

>NTDB_id=168176 AL494_RS11225 WP_047502888.1 2275288..2275536(-) (rcrQ) [Staphylococcus saprophyticus strain FDAARGOS_137]
TTGTTTTCGACGAGTGCGCTAGATATTGAAACAGAAAATAAAATTCAAAAAGCGTTTAAAAAACTTTCAGAACACAGAAC
GTCTTTAATTATTGCACATCGATTATCGACGATTAAAGATGTCGACCGTATTATCTTTATTAAAGATGGTCAAATTTTAG
AAGAAGGAAGTCATGATGTATTAATGCAGCATGATGGTCAATATAAACAACTATACTTATCTCAATTCTCAGATGTTGAA
ACGTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.632

92.683

0.488

Multiple sequence alignment