Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL542_RS09185 Genome accession   NZ_CP014056
Coordinates   1159890..1160570 (+) Length   226 a.a.
NCBI ID   WP_223173093.1    Uniprot ID   -
Organism   Grimontia hollisae strain FDAARGOS_111     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1154890..1165570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL542_RS09160 (AL542_09050) greB 1155149..1155634 (+) 486 WP_005501634.1 transcription elongation factor GreB -
  AL542_RS09165 (AL542_09055) - 1155673..1158000 (+) 2328 WP_005501635.1 Tex family protein -
  AL542_RS09170 (AL542_09060) - 1158067..1158564 (-) 498 WP_040528056.1 hypothetical protein -
  AL542_RS09175 (AL542_09065) - 1158640..1158969 (-) 330 WP_005501637.1 hypothetical protein -
  AL542_RS09180 (AL542_09070) bioH 1159068..1159850 (-) 783 WP_040528058.1 pimeloyl-ACP methyl ester esterase BioH -
  AL542_RS09185 (AL542_09075) comF 1159890..1160570 (+) 681 WP_223173093.1 ComF family protein Machinery gene
  AL542_RS09190 (AL542_09080) nfuA 1160678..1161262 (+) 585 WP_005501641.1 Fe-S biogenesis protein NfuA -
  AL542_RS09195 (AL542_09085) dinF 1161325..1162647 (-) 1323 WP_040528060.1 MATE family efflux transporter DinF -
  AL542_RS09200 (AL542_09090) - 1162649..1163986 (-) 1338 WP_040528107.1 IS4 family transposase -
  AL542_RS09205 (AL542_09095) cyoE 1164186..1165103 (-) 918 WP_005501648.1 heme o synthase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25573.01 Da        Isoelectric Point: 9.5522

>NTDB_id=168130 AL542_RS09185 WP_223173093.1 1159890..1160570(+) (comF) [Grimontia hollisae strain FDAARGOS_111]
MLNIILRALPLRCQLCQHPLGQSRHPWCETCHASLPRHPRCLQCGLPTPYVIESCGHCLKKPPLWDGLICVGTYTFPYDK
LLHRFKYQGHYWLAPALATLLATEIEEPAPLLLPVPMHWRRRISRGFNHSGVLARELAKVLETQYAPNVLKRTRATRQQQ
GLNRQSRLSNLKSAFSVNGKLPPHVALVDDVVTTGATIAQICSLLRRHGVERIDVYCLCRTPPDAI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=168130 AL542_RS09185 WP_223173093.1 1159890..1160570(+) (comF) [Grimontia hollisae strain FDAARGOS_111]
ATGTTGAACATTATCTTACGTGCCTTGCCCCTGCGCTGTCAGCTTTGCCAGCATCCTCTTGGGCAATCCAGACACCCCTG
GTGCGAAACGTGTCACGCCAGCTTGCCTCGCCACCCCCGCTGCCTTCAGTGTGGGCTGCCTACCCCCTACGTGATCGAAA
GTTGCGGGCACTGCCTGAAAAAGCCGCCGCTCTGGGATGGGTTAATCTGTGTCGGCACTTATACCTTCCCTTATGACAAA
CTGCTGCACCGGTTCAAATATCAGGGACACTACTGGCTGGCACCTGCACTTGCCACCTTACTGGCAACAGAAATCGAGGA
GCCAGCCCCTTTACTGTTACCCGTCCCTATGCACTGGCGACGCCGTATCTCACGCGGATTCAACCACAGTGGCGTGTTAG
CCCGCGAGCTTGCAAAGGTTCTGGAGACCCAATATGCGCCCAACGTCTTAAAACGCACCCGTGCCACTCGCCAACAGCAG
GGATTAAACCGACAATCACGCCTTTCCAACCTGAAAAGTGCGTTTTCCGTTAACGGGAAACTACCACCACATGTCGCGCT
GGTCGATGATGTGGTGACCACAGGCGCGACCATCGCCCAGATTTGCAGCTTGCTCAGGCGACATGGTGTGGAACGCATTG
ATGTGTATTGTCTTTGCCGTACCCCGCCCGATGCCATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(132-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.113

94.248

0.491
  comF Vibrio campbellii strain DS40M4

43.668

100

0.442

Multiple sequence alignment