Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL539_RS12960 Genome accession   NZ_CP014053
Coordinates   2394158..2394883 (-) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_108     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2389158..2399883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL539_RS12935 (AL539_21165) - 2390300..2390791 (+) 492 WP_005383002.1 type II secretion system protein M -
  AL539_RS12940 (AL539_21170) - 2390793..2391554 (+) 762 WP_017635007.1 type II secretion system protein N -
  AL539_RS12945 (AL539_21175) cysQ 2391858..2392685 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL539_RS12950 (AL539_21180) nudE 2392730..2393299 (-) 570 WP_065275013.1 ADP compounds hydrolase NudE -
  AL539_RS12955 (AL539_21185) nfuA 2393476..2394060 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  AL539_RS12960 (AL539_21190) comF 2394158..2394883 (-) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  AL539_RS12965 (AL539_21195) bioH 2394968..2395735 (+) 768 WP_047103874.1 pimeloyl-ACP methyl ester esterase BioH -
  AL539_RS12970 (AL539_21200) - 2395860..2396324 (+) 465 WP_005379316.1 hypothetical protein -
  AL539_RS12975 (AL539_21205) - 2396429..2398750 (-) 2322 WP_005379317.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=168095 AL539_RS12960 WP_033905914.1 2394158..2394883(-) (comF) [Vibrio alginolyticus strain FDAARGOS_108]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=168095 AL539_RS12960 WP_033905914.1 2394158..2394883(-) (comF) [Vibrio alginolyticus strain FDAARGOS_108]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment