Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WH25_RS06830 Genome accession   NZ_CP017295
Coordinates   1434642..1436423 (-) Length   593 a.a.
NCBI ID   WP_046165547.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429642..1441423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS06815 (WH25_06815) brnQ 1431378..1432706 (-) 1329 WP_046165549.1 branched-chain amino acid transport system II carrier protein -
  WH25_RS06820 (WH25_06820) - 1432901..1433923 (+) 1023 WP_046165548.1 YdcF family protein -
  WH25_RS06825 (WH25_06825) - 1433972..1434526 (-) 555 WP_012000588.1 GNAT family N-acetyltransferase -
  WH25_RS06830 (WH25_06830) rcrQ 1434642..1436423 (-) 1782 WP_046165547.1 ABC transporter ATP-binding protein Regulator
  WH25_RS06835 (WH25_06835) rcrP 1436433..1438169 (-) 1737 WP_046165546.1 ABC transporter ATP-binding protein Regulator
  WH25_RS06840 (WH25_06840) - 1438431..1438892 (-) 462 WP_046165545.1 hypothetical protein -
  WH25_RS06845 (WH25_06845) rplL 1439113..1439481 (-) 369 WP_008808621.1 50S ribosomal protein L7/L12 -
  WH25_RS06850 (WH25_06850) rplJ 1439555..1440055 (-) 501 WP_012000594.1 50S ribosomal protein L10 -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 66631.90 Da        Isoelectric Point: 5.1492

>NTDB_id=168003 WH25_RS06830 WP_046165547.1 1434642..1436423(-) (rcrQ) [Streptococcus gordonii strain IE35]
MEKKHSFARLWSYLKVYKASVFFAVFLKILSVVMSVLEPFVLGLAITELTSNLLDMAKGVEGAHINVTYVGWVMVLYFIR
ALFYEIGSYYSNYFMTNAVQNTIRDLRNELSKKINHIPVSYFDKHQFGDLLGRFTSDVETVSNALQQSFLQVVNAVFTIS
LVMFMVLYLNLSLALLVIISIPLTYFAANFILKKSQPYFKKQADILGEMNGFVQENLSGFNVLKLYGREEASSQDFEAIT
QNLQEVGFKASFISGLMMPVLNAISDLTYLIVAILGGLQVISGQLTIGNMQAFVQYVWQVSQPIQNLTQLAGQLQSAKSS
LDRIFQVLDEPGEVNDVSEILDNDLTGQVSFHDVDFQYVSDKPLIRNFNLEVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTKGAITVDGHDIRDLSRQDYRKQFGMVLQDAWLYEGTIKENLRFGNLEATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKTLMQGRTSFVIAHRLSTIQEADKILVLKEGQ
IIEQGNHESLLAAKGFYYELYMSQFSKKEETSA

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=168003 WH25_RS06830 WP_046165547.1 1434642..1436423(-) (rcrQ) [Streptococcus gordonii strain IE35]
ATGGAGAAAAAACATTCTTTTGCTCGTTTATGGAGCTATTTAAAAGTTTATAAAGCATCAGTCTTTTTTGCTGTTTTCCT
CAAGATTCTTAGTGTCGTTATGAGTGTTTTGGAGCCCTTTGTGTTGGGGCTTGCAATTACAGAACTGACTAGCAATCTTC
TGGATATGGCTAAGGGAGTTGAAGGAGCTCACATTAACGTCACTTATGTTGGTTGGGTCATGGTCTTGTATTTTATTCGA
GCACTCTTCTATGAAATCGGTTCTTACTATTCAAACTATTTCATGACCAATGCAGTACAAAATACCATCCGGGATTTGAG
AAATGAACTTAGTAAAAAAATTAATCATATTCCTGTATCATATTTTGATAAGCACCAGTTCGGGGATTTACTGGGCCGAT
TTACTAGCGATGTAGAGACAGTCTCAAATGCTTTGCAACAAAGCTTTTTGCAAGTAGTGAATGCTGTGTTTACTATTTCC
TTGGTTATGTTTATGGTTCTTTATCTAAACTTGTCACTTGCTCTGCTTGTGATTATCAGTATTCCTTTGACCTATTTTGC
GGCAAACTTTATATTGAAGAAATCTCAACCTTACTTTAAAAAGCAGGCTGATATTTTGGGGGAAATGAATGGTTTTGTCC
AAGAAAATCTGAGTGGTTTTAATGTTTTAAAACTTTATGGAAGAGAAGAGGCTTCTAGTCAAGACTTTGAAGCTATTACA
CAAAATCTTCAAGAAGTAGGTTTTAAGGCAAGTTTCATTTCTGGATTGATGATGCCTGTTTTGAACGCGATTTCTGATTT
GACCTATTTGATTGTAGCAATCTTAGGAGGTTTACAAGTAATCTCTGGACAATTAACAATTGGGAATATGCAAGCTTTTG
TTCAATATGTCTGGCAGGTTAGTCAACCAATTCAAAACCTAACACAGTTAGCAGGTCAATTGCAAAGCGCTAAGTCTTCT
TTAGATCGTATTTTCCAAGTTCTAGACGAACCTGGAGAAGTCAATGATGTGTCTGAAATACTGGATAATGATTTAACTGG
TCAGGTCAGCTTTCATGATGTAGACTTTCAGTATGTATCAGACAAGCCACTCATTCGGAATTTCAATCTGGAAGTCAAAC
CTGGAGAAATGGTGGCTATTGTAGGTCCGACTGGTGCTGGTAAGACTACGCTGATTAATTTGCTCATGCGTTTCTACGAT
GTGACCAAAGGTGCGATTACTGTGGATGGTCACGATATTCGAGACCTTTCACGCCAGGACTACCGTAAACAGTTTGGTAT
GGTGCTGCAGGATGCCTGGCTTTATGAAGGGACTATCAAGGAAAATCTTCGCTTCGGGAACTTAGAGGCTACTGATGAAG
AAATTGTAGAAGCGGCCAAGGCAGCTAATGTGGATCACTTTATCCGTACATTACCAGGTGGATATAATATGGAAATGAAC
CAAGAGTCAAGCAATATCTCGCTGGGTCAGAAACAGTTGCTTACGATTGCACGAGCGCTTCTAGCAGATCCTAAGATTCT
TATTTTGGATGAAGCAACTTCGTCTGTCGATACACGTCTTGAACTTTTGATTCAGAAGGCTATGAAGACACTCATGCAAG
GGCGGACCAGTTTTGTCATTGCTCACCGACTGTCGACCATTCAGGAGGCAGATAAGATTTTGGTACTCAAAGAGGGGCAA
ATCATAGAGCAAGGAAATCATGAGTCCCTCTTGGCTGCAAAAGGATTCTATTATGAATTGTACATGAGTCAATTCTCCAA
AAAAGAAGAAACTAGCGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.013

100

0.44