Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL545_RS23585 Genome accession   NZ_CP014045
Coordinates   3175249..3175974 (+) Length   241 a.a.
NCBI ID   WP_025998648.1    Uniprot ID   A0AAW9AHG9
Organism   Vibrio alginolyticus strain FDAARGOS_114     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3170249..3180974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL545_RS23570 (AL545_23570) - 3171382..3173703 (+) 2322 WP_017820698.1 Tex family protein -
  AL545_RS23575 (AL545_23575) - 3173808..3174272 (-) 465 WP_005379316.1 hypothetical protein -
  AL545_RS23580 (AL545_23580) bioH 3174397..3175164 (-) 768 WP_021707605.1 pimeloyl-ACP methyl ester esterase BioH -
  AL545_RS23585 (AL545_23585) comF 3175249..3175974 (+) 726 WP_025998648.1 amidophosphoribosyltransferase Machinery gene
  AL545_RS23590 (AL545_23590) nfuA 3176072..3176656 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  AL545_RS23595 (AL545_23595) nudE 3176833..3177402 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  AL545_RS23600 (AL545_23600) cysQ 3177447..3178274 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL545_RS23605 (AL545_23605) - 3178578..3179339 (-) 762 WP_017820696.1 type II secretion system protein N -
  AL545_RS23610 (AL545_23610) - 3179341..3179832 (-) 492 WP_005379305.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27767.95 Da        Isoelectric Point: 9.2064

>NTDB_id=167948 AL545_RS23585 WP_025998648.1 3175249..3175974(+) (comF) [Vibrio alginolyticus strain FDAARGOS_114]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=167948 AL545_RS23585 WP_025998648.1 3175249..3175974(+) (comF) [Vibrio alginolyticus strain FDAARGOS_114]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473

Multiple sequence alignment