Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL541_RS16665 Genome accession   NZ_CP014040
Coordinates   3337845..3338570 (-) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3332845..3343570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS16640 (AL541_25010) - 3333999..3334490 (+) 492 WP_047103746.1 type II secretion system protein M -
  AL541_RS16645 (AL541_25015) - 3334492..3335253 (+) 762 WP_104979931.1 type II secretion system protein N -
  AL541_RS16650 (AL541_25020) cysQ 3335546..3336373 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL541_RS16655 (AL541_25025) nudE 3336417..3336986 (-) 570 WP_042522602.1 ADP compounds hydrolase NudE -
  AL541_RS16660 (AL541_25030) nfuA 3337163..3337747 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  AL541_RS16665 (AL541_25035) comF 3337845..3338570 (-) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  AL541_RS16670 (AL541_25040) bioH 3338655..3339422 (+) 768 WP_192947889.1 pimeloyl-ACP methyl ester esterase BioH -
  AL541_RS16675 (AL541_25045) - 3339547..3340011 (+) 465 WP_005379316.1 hypothetical protein -
  AL541_RS16680 (AL541_25050) - 3340116..3342437 (-) 2322 WP_005379317.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=167851 AL541_RS16665 WP_033905914.1 3337845..3338570(-) (comF) [Vibrio alginolyticus strain FDAARGOS_110]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=167851 AL541_RS16665 WP_033905914.1 3337845..3338570(-) (comF) [Vibrio alginolyticus strain FDAARGOS_110]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment