Detailed information NTG0167796

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AL538_RS11555
• Genome accession: NZ_CP014038
• Coordinates: 2279871..2280878 (-)
• Length: 335 a.a.
• NCBI ID: WP_005450580.1
• Uniprot ID: K5TI37
• Organism: Vibrio harveyi strain FDAARGOS_107
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2274871..2285878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL538_RS11530 (AL538_10780)	rraA	2275098..2275625 (-)	528	WP_005450585.1	ribonuclease E activity regulator RraA	-
AL538_RS11535 (AL538_10785)	-	2275701..2276618 (-)	918	WP_005450584.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AL538_RS11540 (AL538_10790)	hslU	2276927..2278258 (-)	1332	WP_009698879.1	HslU--HslV peptidase ATPase subunit	-
AL538_RS11545 (AL538_10795)	hslV	2278288..2278839 (-)	552	WP_009698878.1	ATP-dependent protease subunit HslV	-
AL538_RS11550 (AL538_10800)	-	2279160..2279705 (-)	546	WP_005450581.1	SPOR domain-containing protein	-
AL538_RS11555 (AL538_10805)	cytR	2279871..2280878 (-)	1008	WP_005450580.1	DNA-binding transcriptional regulator CytR	Regulator
AL538_RS11560 (AL538_10810)	priA	2281085..2283286 (-)	2202	WP_061065559.1	primosomal protein N'	-
AL538_RS11570 (AL538_10815)	rpmE	2283583..2283804 (+)	222	WP_005450576.1	50S ribosomal protein L31	-
AL538_RS11575 (AL538_10820)	rpsJ	2284261..2284572 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
AL538_RS11580 (AL538_10825)	rplC	2284587..2285216 (+)	630	WP_005435072.1	50S ribosomal protein L3	-
AL538_RS11585 (AL538_10830)	rplD	2285234..2285836 (+)	603	WP_005435074.1	50S ribosomal protein L4	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36918.48 Da
• Isoelectric Point: 5.9796

>NTDB_id=167796 AL538_RS11555 WP_005450580.1 2279871..2280878(-) (cytR) [Vibrio harveyi strain FDAARGOS_107]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=167796 AL538_RS11555 WP_005450580.1 2279871..2280878(-) (cytR) [Vibrio harveyi strain FDAARGOS_107]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCGAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTTGGCGATAGCGGTCAGCAGAAAAAGCGCGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTCGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTCGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCTGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAACTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGTGACACCATGGCGATTGGTGCTATTCAAGAGGCGAAACGTCTTGGTCTGCGTATTCCGCAGGATTT
GTCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGATGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGTAGTGCAGCGCCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: K5TI37

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	96.386	99.104	0.955
cytR	Vibrio cholerae C6706	90.663	99.104	0.899