Detailed information NTG0167796

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: A4W88_RS04050
• Genome accession: NZ_CP017275
• Coordinates: 785371..787899 (+)
• Length: 842 a.a.
• NCBI ID: WP_056948399.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.1398
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 780371..792899

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W88_RS04030 (A4W88_03995)	-	781013..782311 (+)	1299	WP_056948397.1	pyrimidine-nucleoside phosphorylase	-
A4W88_RS04035 (A4W88_04000)	-	782548..783882 (+)	1335	WP_025015827.1	FAD-dependent oxidoreductase	-
A4W88_RS04040 (A4W88_04005)	-	784035..784694 (+)	660	WP_011374509.1	histidine phosphatase family protein	-
A4W88_RS04045 (A4W88_04010)	-	784706..785365 (+)	660	WP_011374510.1	tetratricopeptide repeat protein	-
A4W88_RS04050 (A4W88_04015)	recD/recD2/recDB	785371..787899 (+)	2529	WP_056948399.1	ATP-dependent RecD-like DNA helicase	Machinery gene
A4W88_RS04055 (A4W88_04020)	-	787942..789153 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
A4W88_RS04060 (A4W88_04025)	-	789214..789453 (-)	240	WP_011374513.1	hypothetical protein	-
A4W88_RS04065 (A4W88_04030)	-	789456..790550 (-)	1095	WP_056948400.1	site-specific integrase	-
A4W88_RS04070 (A4W88_04035)	-	790753..791043 (-)	291	WP_099769380.1	hypothetical protein	-
A4W88_RS04075 (A4W88_04040)	-	791058..791912 (-)	855	WP_099769379.1	toxin Cry1Ac domain D-VI-related protein	-
A4W88_RS04080 (A4W88_04045)	-	792055..792675 (-)	621	WP_096584421.1	LexA family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93343.54 Da
• Isoelectric Point: 5.0770

>NTDB_id=167796 A4W88_RS04050 WP_056948399.1 785371..787899(+) (recD/recD2/recDB) [Latilactobacillus sakei strain TMW 1.1398]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKLTPAKAAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=167796 A4W88_RS04050 WP_056948399.1 785371..787899(+) (recD/recD2/recDB) [Latilactobacillus sakei strain TMW 1.1398]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCGATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAGGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCCGGCATTGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGATGCGATTGATAAGATCTTAGCGGACT
CAACTGTTTTAGCGCCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAACAATGGCATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAACATCTACCAAACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTGGCAGAGCAATTAATGGTCTTGGCACACGATGGCAAAGTCGTTGGTGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCCAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGCCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACTCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTCCCAATT
TTATTGGCAGCGCCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGAATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTATCGACAAGACGATGAGTCGACGATTATTCCGCTAGCTCATGAGATTAATCAGGGCCAACTACCAGCCG
ATCTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCGGTGATTAAGCAAGTGGTC
ACTAAAGCAAAAGACCGGGGCTTTGAAACAAAAGACATTCAGGTGCTAGCACCGATGTATCGGGGCGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCAAAGGTCGATGATCGTAAGAAACAAGTCAGTTTAGGTAACGTTC
ATTATCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAACTAAACGTTTTTAACGGTGAAATCGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCCTTGGTTAACCAATATCAACGGATGCTGAAACGAAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTACTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAGGCGGCCAAGGAACTCTCCGCAAATCGGCAAACAACGCTTAA
GGAACGGATTATCAGCGTCTTTAATGGCGAAAAAGTGAGCCAAGCGGTCAAAACCGCTAGTGTTGGCTTAACGGAAGCTA
AACCAACTGTTGAAAAACTAACCCCGGCTAAAGCAGCAGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGGATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-547)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	46.933	89.074	0.418