Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL538_RS11060 Genome accession   NZ_CP014038
Coordinates   2175998..2176723 (-) Length   241 a.a.
NCBI ID   WP_061065531.1    Uniprot ID   -
Organism   Vibrio harveyi strain FDAARGOS_107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170998..2181723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL538_RS11035 (AL538_10300) - 2172155..2172646 (+) 492 WP_005448492.1 type II secretion system protein M -
  AL538_RS11040 (AL538_10305) - 2172648..2173409 (+) 762 WP_005448490.1 type II secretion system protein N -
  AL538_RS11045 (AL538_10310) cysQ 2173699..2174526 (-) 828 WP_005448488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL538_RS11050 (AL538_10315) nudE 2174574..2175140 (-) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  AL538_RS11055 (AL538_10320) nfuA 2175316..2175900 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  AL538_RS11060 (AL538_10325) comF 2175998..2176723 (-) 726 WP_061065531.1 ComF family protein Machinery gene
  AL538_RS11065 (AL538_10330) bioH 2176808..2177572 (+) 765 WP_050925837.1 pimeloyl-ACP methyl ester esterase BioH -
  AL538_RS11070 (AL538_10335) - 2177709..2178173 (+) 465 WP_009700714.1 hypothetical protein -
  AL538_RS11075 (AL538_10340) - 2178277..2180598 (-) 2322 WP_017189965.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27740.82 Da        Isoelectric Point: 8.4332

>NTDB_id=167793 AL538_RS11060 WP_061065531.1 2175998..2176723(-) (comF) [Vibrio harveyi strain FDAARGOS_107]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKNAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIMDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=167793 AL538_RS11060 WP_061065531.1 2175998..2176723(-) (comF) [Vibrio harveyi strain FDAARGOS_107]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAACGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTATGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment