Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL537_RS05340 Genome accession   NZ_CP014036
Coordinates   1075434..1076159 (-) Length   241 a.a.
NCBI ID   WP_104971140.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_105     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1070434..1081159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL537_RS05315 (AL537_05315) - 1071578..1072069 (+) 492 WP_012841219.1 type II secretion system protein M -
  AL537_RS05320 (AL537_05320) - 1072071..1072832 (+) 762 WP_104971139.1 type II secretion system protein N -
  AL537_RS05325 (AL537_05325) cysQ 1073134..1073961 (-) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL537_RS05330 (AL537_05330) nudE 1074006..1074575 (-) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  AL537_RS05335 (AL537_05335) nfuA 1074752..1075336 (-) 585 WP_005394968.1 Fe-S biogenesis protein NfuA -
  AL537_RS05340 (AL537_05340) comF 1075434..1076159 (-) 726 WP_104971140.1 phosphoribosyltransferase family protein Machinery gene
  AL537_RS05345 (AL537_05345) bioH 1076244..1077011 (+) 768 WP_006741796.1 pimeloyl-ACP methyl ester esterase BioH -
  AL537_RS05350 (AL537_05350) - 1077136..1077600 (+) 465 WP_005379316.1 hypothetical protein -
  AL537_RS05355 (AL537_05355) - 1077705..1080026 (-) 2322 WP_104971141.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27792.96 Da        Isoelectric Point: 9.2109

>NTDB_id=167744 AL537_RS05340 WP_104971140.1 1075434..1076159(-) (comF) [Vibrio diabolicus strain FDAARGOS_105]
MLSHHWQNIMHRVLSSQCGLCRFPIHTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRVAQSQRGNTKASREQNLKDAFVLNKRPPSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=167744 AL537_RS05340 WP_104971140.1 1075434..1076159(-) (comF) [Vibrio diabolicus strain FDAARGOS_105]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTGTTGAGCAGTCAATGCGGTCTGTGTCGGTTCCCTATTCACAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAGAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGCTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACCAATTTTGATGCG
AAGGTCTTTCGCCGGGTCAGAGTCGCCCAATCACAGCGCGGCAATACCAAAGCGAGCCGTGAACAAAATCTAAAAGACGC
GTTTGTTCTCAATAAGCGACCGCCATCTTCCCACGTTGCCATCGTCGATGATGTGGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

49.167

99.585

0.49

Multiple sequence alignment