Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL536_RS44310 Genome accession   NZ_CP014035
Coordinates   2942938..2943573 (-) Length   211 a.a.
NCBI ID   WP_392396661.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2937938..2948573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS44280 (AL536_21310) gspL 2938190..2939401 (+) 1212 WP_061057131.1 type II secretion system protein GspL -
  AL536_RS44285 (AL536_21315) - 2939411..2939917 (+) 507 WP_020329336.1 type II secretion system protein M -
  AL536_RS44290 (AL536_21320) - 2939917..2940675 (+) 759 WP_024373336.1 type II secretion system protein N -
  AL536_RS44295 (AL536_21325) cysQ 2940705..2941532 (-) 828 WP_020429367.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL536_RS44300 (AL536_21330) nudE 2941556..2942104 (-) 549 WP_020429366.1 ADP compounds hydrolase NudE -
  AL536_RS44305 (AL536_21335) nfuA 2942250..2942837 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  AL536_RS44310 (AL536_21340) comF 2942938..2943573 (-) 636 WP_392396661.1 phosphoribosyltransferase family protein Machinery gene
  AL536_RS44315 (AL536_21345) bioH 2943726..2944496 (+) 771 WP_020329342.1 pimeloyl-ACP methyl ester esterase BioH -
  AL536_RS44320 (AL536_21350) - 2944625..2945095 (+) 471 WP_020329343.1 hypothetical protein -
  AL536_RS44325 (AL536_21355) - 2945177..2947486 (-) 2310 WP_061057133.1 Tex family protein -
  AL536_RS44330 (AL536_21360) - 2947542..2948204 (-) 663 WP_055453005.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23784.31 Da        Isoelectric Point: 8.7674

>NTDB_id=167709 AL536_RS44310 WP_392396661.1 2942938..2943573(-) (comF) [Vibrio fluvialis strain ATCC 33809]
MPLESHNTQSLCGACLNWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDYRFPLSQSVHQLKYQRQFWQAQP
LAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRLATPPQQGLNKAQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=167709 AL536_RS44310 WP_392396661.1 2942938..2943573(-) (comF) [Vibrio fluvialis strain ATCC 33809]
TTGCCCCTTGAATCGCATAACACGCAGAGCTTGTGTGGCGCATGCCTCAACTGGTACGCACCAACCACGCGTTGCGCTCG
CTGCGGCCTGCCTTGTGAAACCGCCACCGAACAGTGTGGCCAATGCCTGACATCGCCGCCGCCGTGGCATAAGCTCTATT
GTTTGGGCGATTACCGTTTTCCACTCAGTCAGAGCGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCAGCCG
CTGGCCGGATTGTTAGCCCCACGAATAGTATCGCCCGCCCCTCTGGTGACCTGCGTGCCGCTGCACTGGCGCCGCCATGC
CTGGCGCGGTTTCAATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGCTGT
TTTCCCGTCGCCTGGCCACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGCCGGCGCAATCTCAACCAAGCTTTTGTC
TTAAACAGTGCACCGAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.403

100

0.654
  comF Vibrio campbellii strain DS40M4

51.923

98.578

0.512

Multiple sequence alignment