Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AL475_RS16210 Genome accession   NZ_CP014033
Coordinates   1725045..1725680 (-) Length   211 a.a.
NCBI ID   WP_404814883.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720045..1730680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS16180 (AL475_08220) gspL 1720297..1721508 (+) 1212 WP_104966406.1 type II secretion system protein GspL -
  AL475_RS16185 (AL475_08225) - 1721518..1722024 (+) 507 WP_104966407.1 type II secretion system protein M -
  AL475_RS16190 (AL475_08230) - 1722024..1722782 (+) 759 WP_104966408.1 type II secretion system protein N -
  AL475_RS16195 (AL475_08235) cysQ 1722812..1723639 (-) 828 WP_032080325.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AL475_RS16200 (AL475_08240) nudE 1723663..1724211 (-) 549 WP_020429366.1 ADP compounds hydrolase NudE -
  AL475_RS16205 (AL475_08245) nfuA 1724357..1724944 (-) 588 WP_024373335.1 Fe-S biogenesis protein NfuA -
  AL475_RS16210 (AL475_08250) comF 1725045..1725680 (-) 636 WP_404814883.1 phosphoribosyltransferase family protein Machinery gene
  AL475_RS16215 (AL475_08255) bioH 1725833..1726603 (+) 771 WP_104966409.1 pimeloyl-ACP methyl ester esterase BioH -
  AL475_RS16220 (AL475_08260) - 1726732..1727202 (+) 471 WP_020329343.1 hypothetical protein -
  AL475_RS16225 (AL475_08265) - 1727284..1729593 (-) 2310 WP_104966410.1 Tex family protein -
  AL475_RS16230 (AL475_08270) - 1729649..1730311 (-) 663 WP_104966411.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23813.35 Da        Isoelectric Point: 8.7674

>NTDB_id=167654 AL475_RS16210 WP_404814883.1 1725045..1725680(-) (comF) [Vibrio fluvialis strain FDAARGOS_100]
MPLESHSTQSLCGACLDWYAPTTRCARCGLPCETATEQCGQCLTSPPPWHKLYCLGDYRFPLNQSVHQLKYQRQFWQARP
LAGLLAPRIVSPAPLVTCVPLHWRRHAWRGFNQSDVLARQLAQQLGSQYQPRLFSRRLATPPQQGLNKAQRRRNLNQAFV
LNSAPSHRHIAIVDDVVTTGSTVRQLCNLLLDVGVESLDIYCICRTPEPGD

Nucleotide


Download         Length: 636 bp        

>NTDB_id=167654 AL475_RS16210 WP_404814883.1 1725045..1725680(-) (comF) [Vibrio fluvialis strain FDAARGOS_100]
TTGCCCCTTGAATCGCATAGCACGCAGAGCTTGTGTGGCGCATGCCTCGACTGGTACGCACCAACCACGCGCTGCGCTCG
CTGCGGCCTGCCTTGTGAAACCGCTACCGAGCAGTGTGGCCAATGCCTGACATCGCCGCCACCGTGGCACAAGCTCTATT
GTTTGGGCGATTACCGTTTTCCACTCAACCAGAGTGTGCATCAGCTCAAATATCAGCGCCAGTTCTGGCAAGCGCGGCCG
CTGGCCGGATTGTTAGCCCCAAGAATTGTATCGCCCGCCCCACTGGTGACCTGCGTACCGCTGCACTGGCGCCGCCATGC
CTGGCGCGGTTTCAATCAAAGTGATGTTTTGGCACGTCAACTTGCGCAGCAACTCGGCAGCCAATACCAGCCTCGGTTGT
TTTCCCGTCGCCTGGCTACCCCGCCGCAGCAAGGCCTGAACAAAGCTCAGCGACGGCGGAATCTCAACCAAGCTTTTGTC
TTAAACAGTGCGCCGAGCCACAGACATATCGCGATCGTTGATGATGTCGTCACCACAGGCAGTACGGTGCGACAATTATG
CAATTTACTGCTTGATGTAGGCGTCGAAAGCCTTGATATTTACTGCATATGCCGCACTCCTGAACCGGGTGACTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.403

100

0.654
  comF Vibrio campbellii strain DS40M4

52.709

96.209

0.507

Multiple sequence alignment