Detailed information NTG0167638

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: A4W86_RS04360
• Genome accession: NZ_CP017272
• Coordinates: 869568..872096 (+)
• Length: 842 a.a.
• NCBI ID: WP_251950933.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain TMW 1.1239
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 864568..877096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4W86_RS04340 (A4W86_04310)	-	865209..866507 (+)	1299	WP_011374507.1	pyrimidine-nucleoside phosphorylase	-
A4W86_RS04345 (A4W86_04315)	-	866744..868078 (+)	1335	WP_035147226.1	FAD-dependent oxidoreductase	-
A4W86_RS04350 (A4W86_04320)	-	868232..868891 (+)	660	WP_141265918.1	histidine phosphatase family protein	-
A4W86_RS04355 (A4W86_04325)	-	868903..869562 (+)	660	WP_112206353.1	tetratricopeptide repeat protein	-
A4W86_RS04360 (A4W86_04330)	recD/recD2/recDB	869568..872096 (+)	2529	WP_251950933.1	ATP-dependent RecD-like DNA helicase	Machinery gene
A4W86_RS04365 (A4W86_04335)	-	872139..873350 (+)	1212	WP_011374512.1	GNAT family N-acetyltransferase	-
A4W86_RS04370 (A4W86_04340)	-	873411..873650 (-)	240	WP_011374513.1	hypothetical protein	-
A4W86_RS04375 (A4W86_04345)	-	873915..874526 (+)	612	WP_016264992.1	LysE family transporter	-
A4W86_RS04380 (A4W86_04350)	-	874618..875730 (+)	1113	WP_251950934.1	DNA alkylation repair protein	-
A4W86_RS04385 (A4W86_04355)	-	875909..876625 (+)	717	WP_016264994.1	MerR family transcriptional regulator	-

Sequence

Protein

• Length: 842 a.a.
• Molecular weight: 93340.49 Da
• Isoelectric Point: 5.0804

>NTDB_id=167638 A4W86_RS04360 WP_251950933.1 869568..872096(+) (recD/recD2/recDB) [Latilactobacillus sakei strain TMW 1.1239]
MAILETENTVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTINWHEPEIVVTGSFGEIKEDERYTFYGKVITHPKYGQ
QFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVDTLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGM
EQIIIGLNNYGFGSSMAYNIYQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMALAHDGKVVGDENRIYPNGLYNAEWQIANHLMRIENERDKI
SYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFLLTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPI
LLAAPTGRAAKRMSETTGLPASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQKDRSFIQCSPYQIESVIKQVV
TKAKERGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPKVDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQI
TGITYAKDSDDKMDELTIAFDSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPAVEKPTPAKEAAPEQLALVDDADDS
EETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTSAK

Nucleotide

• Length: 2529 bp

>NTDB_id=167638 A4W86_RS04360 WP_251950933.1 869568..872096(+) (recD/recD2/recDB) [Latilactobacillus sakei strain TMW 1.1239]
ATGGCGATTTTGGAAACAGAAAATACGGTCGATAATAAACCAACCGTTACCGGAACGGTCCAAAGTGTTTTTTACGAGAA
TCCCGGTAACTTTTTTAAGATTCTCTTGATTAAAATTGCCCATAAGACAATCAATTGGCACGAGCCAGAGATTGTCGTGA
CTGGTAGTTTTGGTGAGATTAAAGAAGACGAACGCTATACGTTTTATGGCAAAGTCATCACCCATCCTAAATACGGTCAA
CAATTTCAAGCTGACAACTATCAAGTTGACCAACCGACGACTAAGACTGGCTTAGTCGCCTATTTATCTGGCGAAAAATT
TGCTGGCATCGGTCAAAAAACGGCTGAGAAAATTGTCGATACCTTAGGATTAGACGCGATTGATAAGATCTTAGCGGATT
CAACCGTTTTAGCACCGCTGGGTTTAAATGATAAGAAACAAGCGACGTTGGTTGAAACGCTGACGATTAATAATGGGATG
GAACAAATTATCATTGGTCTCAATAATTACGGTTTTGGGAGCTCGATGGCCTATAATATCTATCAGACTTATCACGAAGA
TACCTTGAAGATTATTCAAGAAAATCCTTATCAACTAGTGGCCGACATTGCCGGTATTGGGTTTAAACGAGCGGATAATT
TAGCTGAGAAGATTGGGTTTGCAGCCGATTCACCAGCGCGGATTCAAGGGGCGCTGATGCAAGCCTTGAACGAACTGACC
AATCAGGCCGGCGATACGTTTACCCAGGCGAAGCCGTTATTAGCAGCCAGCATTCAATTGATGGAACAGGCCCGGAACGT
GGCGATTGATCCGAATTTAGTAGCAGAGCAATTAATGGCCTTAGCACACGATGGCAAAGTCGTCGGAGATGAAAATCGGA
TTTATCCGAATGGTTTGTACAACGCGGAATGGCAAATTGCGAACCACTTGATGCGGATTGAAAATGAACGGGATAAAATT
AGTTATCCTAAACATGATCTGGATAAAGAAATTCGTCGGCTCGAAAAACGCTTTAAGATGAGCTATGATGATGTCCAAAA
AAATGCAATTAAATTAGCGATGACGCACAGAGCCTTTCTACTAACAGGGGGCCCTGGTACTGGGAAAACAACGATTATTA
ATGGGATTGTGACTTTATTTGCTGAGTTAAACGGTCTTTCGCTTGATATCAACGAATATAAAGACACACCATTTCCAATT
TTATTGGCAGCACCTACTGGGCGGGCCGCTAAACGGATGAGCGAAACAACTGGCTTGCCAGCTAGCACGATTCATCGCTT
ATTAGGGATTACGGGACGTGAAAATAATCCTGATATCGATAGTAAGGAACTAGAAGGCGGCTTATTAATTGTCGATGAAA
TGTCGATGGTTGATACGTACCTCTTTAGATCATTGATTCGAGCAGTGCCTAGCAATATGCAAGTCGTCTTTGTTGGTGAT
AAAGATCAGTTGCCATCAGTTGGCGCGGGGCAAGTCTTTTTTGATTTACTGCAGAGTCAGGCAATTCCGGCAATCGAACT
GCAACAAATCTACCGACAAGACGATGAGTCGACGATTATTCCGCTAGCCCATGAGATTAATCAGGGCCAACTACCAGCTG
ATTTACTCCAACCGCAAAAGGATCGGAGCTTTATTCAGTGCAGTCCTTATCAGATTGAATCAGTGATTAAACAAGTGGTC
ACTAAAGCAAAAGAACGGGGTTTTGAGACGAAGGACATTCAAGTGCTAGCACCGATGTATCGTGGGGCAGCCGGAATTGA
TCAATTAAATCCAATGATTCAAAATATCATGAATCCGAAGGTCGATGATCGTAAGAAACAAGTTAGTTTAGGCAATGTTC
ATTACCGGATTGGCGATAAGATTTTACATCTGGTTAATAGTCCGGAATTAAACGTCTTTAACGGTGAAATTGGGCAAATA
ACCGGGATTACGTATGCTAAAGATAGTGATGACAAGATGGACGAGTTAACGATTGCCTTTGATAGTACCGAAATTACCTA
TAAACGGACGGAATGGCATAAAATTACGTTGGCGTATTGTACGTCGATTCATAAGGCTCAAGGTTCTGAATTTGAAATGG
TAATTCTACCATTGGTTAACCAATACCAGCGGATGCTGAAACGGAACTTGTTGTATACAGCAGTGACACGGGCGCGGTCC
TTATTGATTTTAATTGGGGAACCAAGTGCTTTTGATAAAGCAGCTAAGGAATTATCCGCAAACCGACAAACAACGCTTAA
AGAACGGATTATCAGCGTCTTTAATGGTGAAAAGGTGAGCCAAGCGGTCAAAACTGCAAGTGTTGGTTTAACGGAAGCTA
AACCGGCTGTTGAAAAGCCAACGCCGGCTAAAGAAGCGGCGCCAGAACAATTGGCATTAGTGGACGATGCAGATGACAGC
GAAGAAACAATTCAAGAAGCACCTGCTAATTATGAATTAACACCAGCCTTGGTGAGTGGTCATCAGATTGACCCGATGAT
TGGAATGGCGGATTTAACGCCGTACACATTCATGACAAGTGCTAAGTAG

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-660)

• AAA domain (AAA_30) (342-547)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	47.067	89.074	0.419