Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BFP66_RS01755 Genome accession   NZ_CP017142
Coordinates   329198..329986 (+) Length   262 a.a.
NCBI ID   WP_063725165.1    Uniprot ID   -
Organism   Streptococcus suis strain GZ0565     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 324198..334986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFP66_RS11085 - 325088..326453 (+) 1366 Protein_299 Cof-type HAD-IIB family hydrolase -
  BFP66_RS01740 (BFP66_01740) tnpA 326618..327082 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  BFP66_RS01745 (BFP66_01745) - 327225..327677 (-) 453 WP_024387582.1 universal stress protein -
  BFP66_RS01750 (BFP66_01750) - 327832..329046 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  BFP66_RS01755 (BFP66_01755) codY 329198..329986 (+) 789 WP_063725165.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BFP66_RS01760 (BFP66_01760) - 329988..330539 (+) 552 WP_024396049.1 cysteine hydrolase family protein -
  BFP66_RS01765 (BFP66_01765) rplS 330805..331152 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  BFP66_RS01770 (BFP66_01770) tnpA 331362..331826 (+) 465 WP_002939996.1 IS200/IS605-like element ISSsu4 family transposase -
  BFP66_RS01775 (BFP66_01775) - 332093..332767 (+) 675 WP_012774968.1 hydrolase -
  BFP66_RS01780 (BFP66_01780) gatC 332984..333286 (+) 303 WP_024395793.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  BFP66_RS01785 (BFP66_01785) gatA 333286..334752 (+) 1467 WP_024395792.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29362.42 Da        Isoelectric Point: 4.6190

>NTDB_id=166773 BFP66_RS01755 WP_063725165.1 329198..329986(+) (codY) [Streptococcus suis strain GZ0565]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKVVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=166773 BFP66_RS01755 WP_063725165.1 329198..329986(+) (codY) [Streptococcus suis strain GZ0565]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGATTGTAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAATGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTGTCTTACTCAGA
AATGAAGGTAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.439

93.893

0.492