Detailed information NTG0166555

Bioinformatically predicted

Overview

• Name: amiD
• Type: Regulator
• Locus tag: BS16045_RS06245
• Genome accession: NZ_CP017112
• Coordinates: 1200673..1201590 (+)
• Length: 305 a.a.
• NCBI ID: WP_003232954.1
• Uniprot ID: A0A9W5LHY5
• Organism: Bacillus subtilis strain BS16045
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1195673..1206590

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BS16045_RS06230 (BS16045_01220)	trpS	1196253..1197245 (-)	993	WP_003245134.1	tryptophan--tRNA ligase	-
BS16045_RS06235 (BS16045_01221)	oppA	1197989..1199626 (+)	1638	WP_015252360.1	oligopeptide ABC transporter substrate-binding protein OppA	-
BS16045_RS06240 (BS16045_01222)	oppB	1199734..1200669 (+)	936	WP_003245554.1	oligopeptide ABC transporter permease OppB	-
BS16045_RS06245 (BS16045_01223)	amiD	1200673..1201590 (+)	918	WP_003232954.1	oligopeptide ABC transporter permease OppC	Regulator
BS16045_RS06250 (BS16045_01224)	oppD	1201595..1202671 (+)	1077	WP_072173823.1	oligopeptide ABC transporter ATP-binding protein OppD	-
BS16045_RS06255 (BS16045_01225)	oppF	1202673..1203590 (+)	918	WP_003245567.1	oligopeptide ABC transporter ATP-binding protein OppF	-
BS16045_RS06260 (BS16045_01226)	yjbB	1203697..1204914 (+)	1218	WP_010886478.1	MFS transporter	-
BS16045_RS06265 (BS16045_01227)	yjbC	1205078..1205656 (+)	579	WP_003224597.1	GNAT family N-acetyltransferase	-
BS16045_RS06270 (BS16045_01228)	spx	1205837..1206232 (+)	396	WP_014476435.1	transcriptional regulator Spx	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 33621.12 Da
• Isoelectric Point: 10.2873

>NTDB_id=166555 BS16045_RS06245 WP_003232954.1 1200673..1201590(+) (amiD) [Bacillus subtilis strain BS16045]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide

• Length: 918 bp

>NTDB_id=166555 BS16045_RS06245 WP_003232954.1 1200673..1201590(+) (amiD) [Bacillus subtilis strain BS16045]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGAA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAATATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

• Binding-protein-dependent transport system inner membrane component (BPD_transp_1) (121-305)

• N-terminal TM domain of oligopeptide transport permease C (OppC_N) (28-79)

3D structure

• AlphaFold DB: A0A9W5LHY5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiD	Streptococcus thermophilus LMG 18311	35.922	100	0.364
amiD	Streptococcus thermophilus LMD-9	35.922	100	0.364