Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BS16045_RS04500 Genome accession   NZ_CP017112
Coordinates   873760..875574 (+) Length   604 a.a.
NCBI ID   WP_069322462.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS16045     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 868760..880574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS16045_RS04485 (BS16045_00877) glvR 869577..870341 (+) 765 WP_029317468.1 MurR/RpiR family transcriptional regulator GlvR -
  BS16045_RS04490 (BS16045_00878) malP 870356..871939 (+) 1584 WP_003233606.1 PTS maltose transporter subunit IIBC -
  BS16045_RS04495 (BS16045_00879) yfiB 872045..873766 (+) 1722 WP_003243936.1 ABC transporter ATP-binding protein -
  BS16045_RS04500 (BS16045_00880) rcrQ 873760..875574 (+) 1815 WP_069322462.1 ABC transporter ATP-binding protein Regulator
  BS16045_RS04505 (BS16045_00881) catD 875728..876132 (+) 405 WP_015252533.1 DoxX family oxidoreductase CatD -
  BS16045_RS04510 (BS16045_00882) catE 876150..877007 (+) 858 WP_003233597.1 catechol 2,3-dioxygenase -
  BS16045_RS04515 (BS16045_00883) yfiF 877101..878045 (+) 945 WP_003243004.1 AraC family transcriptional regulator -
  BS16045_RS04520 (BS16045_00884) yfiG 878220..879668 (+) 1449 WP_003244331.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67430.22 Da        Isoelectric Point: 9.7755

>NTDB_id=166538 BS16045_RS04500 WP_069322462.1 873760..875574(+) (rcrQ) [Bacillus subtilis strain BS16045]
MLKDIRKPFQYPKLPIDKKEGAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGFIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPNEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKNGEMIEKGSHDELIRQKGFYSDLYESQFDK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=166538 BS16045_RS04500 WP_069322462.1 873760..875574(+) (rcrQ) [Bacillus subtilis strain BS16045]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAGGTGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAAAGAAAAGGACTGCTCATACTTGTCATGC
TGATGGTTGTCATCAGCGCCATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTTATTCCTGTTTTGCTTCTTCTGCTCGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGTCGGAACAATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTCCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATTCCGAAGGTCATGAACTCTTTGAATAACTTAAGCTTTACAATGATTGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTTGTCTTTGCCGAGTATTCAAGACAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGGGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCAGGGCAGTCCATCGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACTAATCTTCTCGCCCGTTTTTACGAGCCTAACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCAAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCTGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACTATTCAAAGAGCGGACCAGATTGTGGTGCTAAAAAACGGTGAAATGATTGAAAAAGGCAGCCATGATGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATATGAAAGCCAATTTGATAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.31

96.026

0.377