Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AUL54_RS17440 Genome accession   NZ_CP013950
Coordinates   3560037..3562397 (+) Length   786 a.a.
NCBI ID   WP_060964659.1    Uniprot ID   A0AAI8MZM9
Organism   Bacillus sp. SDLI1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3555037..3567397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS17420 (AUL54_17430) - 3556411..3556707 (+) 297 WP_016938808.1 post-transcriptional regulator -
  AUL54_RS17425 (AUL54_17435) secDF 3556744..3558963 (+) 2220 WP_060964657.1 protein translocase subunit SecDF -
  AUL54_RS17430 (AUL54_17440) - 3559094..3559591 (+) 498 WP_060964658.1 cation:proton antiporter regulatory subunit -
  AUL54_RS17435 (AUL54_17445) - 3559655..3559981 (+) 327 WP_016938811.1 lipopolysaccharide assembly LapA domain-containing protein -
  AUL54_RS17440 (AUL54_17450) recJ 3560037..3562397 (+) 2361 WP_060964659.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AUL54_RS17445 (AUL54_17455) - 3562403..3562915 (+) 513 WP_003152714.1 adenine phosphoribosyltransferase -
  AUL54_RS17450 (AUL54_17460) relA 3563073..3565277 (+) 2205 WP_060964660.1 GTP diphosphokinase -
  AUL54_RS17455 (AUL54_17465) dtd 3565290..3565733 (+) 444 WP_016938814.1 D-aminoacyl-tRNA deacylase -
  AUL54_RS17460 (AUL54_17470) - 3565759..3567321 (-) 1563 WP_060964661.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 87508.92 Da        Isoelectric Point: 4.8645

>NTDB_id=166497 AUL54_RS17440 WP_060964659.1 3560037..3562397(+) (recJ) [Bacillus sp. SDLI1]
MLASKMRWEIQQPDQEKVKSLTEQLDITPLVASLLVKRGFDTAESARHFLHTKDADFYDPYELKGMREAVDRIKLAVSQG
EPIMIYGDYDADGVTSTSVMLTALRQLSADVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIEKLRTTNRPGLKALIKLSGGDIGQADEETVGFQVAPRLNAVGRIEQADPAVHLLMTEDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVPDLRDRLNQLAEETLTEEDFIPIQEIDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDAAVLDCVGFNQGELEAGIVPGSAISIVGEMSINEWNNRKKPQLMIKDA
AVLEWQLFDIRGKRTWEDTVAALPKEKRVLISFNEKTVRKLRGEELPDELAQITSESEAEALPLDGKYAVFLDVPPSEER
LKRLLDGKKPERIYFVFINHEEHFLSSFPSRSDFKWFYAFLLKRGNFDLSKHGSELARHKGWSIDTINFMTKVFFDLGFV
KIEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=166497 AUL54_RS17440 WP_060964659.1 3560037..3562397(+) (recJ) [Bacillus sp. SDLI1]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGCGCAAGGCATTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAAGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCTCAAGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCGGTGATGCTGACGGCACTCAGACAGCT
GTCGGCGGACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCGCTGATCATTACAGTGGATACGGGAATCGCCGCCGTCCATGAAGCTGAAGTCGCAAAAGAGCTG
GGCTTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCCGACGTATTCGCGATCATCCACCCGAAGCA
GCCGGGCTGCAGCTACCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTAGCGGCCATCGGTACGGTTGCGGATCTGGTGCCGCTGCATGATGAAAACAGATTAATT
GCGTCACTTGGGATCGAAAAGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGGGATAT
CGGACAAGCTGATGAGGAAACGGTCGGGTTTCAGGTTGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCCGTGCATCTGCTGATGACCGAAGACCAGTTTGAAGCGGAGGAATTGGCTTCGGATATTGACCGGCTGAATAAGGAA
CGCCAGAAAATGGTGAAAACCATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCGTCTGCCATTGT
AGTGGCAAAAGCCGGCTGGAACCCGGGGGTTGTCGGTATTGTCGCATCGAAGCTCGCTGAACGTTTTTATCGCCCCGCTG
TCGTGCTGGGGATAGATGAGGAGCAGGGAATCGCTAAAGGATCGGCGCGAAGCATCAGGGGTTTCAACCTTTTTACGAGC
CTTTCACAGTGCAGAGACATTCTCCCTCATTTCGGCGGGCATCCGATGGCCGCAGGAATGACTTTAAAGGCTGAAGATGT
GCCGGATTTAAGAGACAGGCTGAATCAATTGGCTGAAGAAACCCTTACGGAAGAGGATTTTATCCCGATTCAGGAGATTG
ATCTTGTCTGCGGCGTCGAAGACATAACCGTTGAAAGCATTACAGAATTGAATATGCTCTCGCCGTTCGGCATGCTTAAC
CCTAAACCGCATGTCATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCGAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATGCCGCCGTTCTCGATTGCGTCGGCTTTAACCAAGGAGAGCTGGAAGCCGGAATTGTTCCCGGAT
CAGCGATTTCCATTGTCGGCGAAATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGACGCT
GCGGTGCTGGAATGGCAGCTTTTTGATATCAGAGGCAAGCGGACGTGGGAAGATACGGTTGCTGCGCTGCCGAAGGAAAA
ACGGGTGCTCATCAGTTTTAACGAAAAAACTGTCCGAAAACTCCGTGGCGAAGAGCTGCCGGACGAGCTGGCTCAGATCA
CGTCGGAATCCGAGGCGGAGGCTCTTCCGCTTGACGGAAAGTATGCCGTCTTTCTGGATGTGCCGCCGTCAGAGGAGCGG
CTCAAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATCAATCATGAAGAACATTTTCTGTCCTC
ATTTCCATCGCGGAGTGATTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCAATTTTGACTTAAGTAAGCATGGTT
CGGAGCTTGCGAGACACAAAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTACCAGGTAAA
ACAGCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCGGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ACCAAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

82.061

100

0.821

Multiple sequence alignment