Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AUL54_RS02540 Genome accession   NZ_CP013950
Coordinates   587376..588155 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus sp. SDLI1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 582376..593155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUL54_RS02510 (AUL54_02510) fliH 582421..583173 (-) 753 WP_060962793.1 flagellar assembly protein FliH -
  AUL54_RS02515 (AUL54_02515) fliG 583166..584182 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  AUL54_RS02520 (AUL54_02520) fliF 584195..585805 (-) 1611 WP_060962794.1 flagellar basal-body MS-ring/collar protein FliF -
  AUL54_RS02525 (AUL54_02525) fliE 585851..586171 (-) 321 WP_060962795.1 flagellar hook-basal body complex protein FliE -
  AUL54_RS02530 (AUL54_02530) flgC 586182..586634 (-) 453 WP_016936125.1 flagellar basal body rod protein FlgC -
  AUL54_RS02535 (AUL54_02535) flgB 586634..587023 (-) 390 WP_016936126.1 flagellar basal body rod protein FlgB -
  AUL54_RS02540 (AUL54_02540) codY 587376..588155 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AUL54_RS02545 (AUL54_02545) hslU 588193..589596 (-) 1404 WP_060962796.1 HslU--HslV peptidase ATPase subunit -
  AUL54_RS02550 (AUL54_02550) hslV 589613..590158 (-) 546 WP_060962797.1 ATP-dependent protease subunit HslV -
  AUL54_RS02555 (AUL54_02555) xerC 590174..591091 (-) 918 WP_060962798.1 tyrosine recombinase XerC -
  AUL54_RS02560 (AUL54_02560) trmFO 591161..592468 (-) 1308 WP_016936130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=166444 AUL54_RS02540 WP_013352252.1 587376..588155(-) (codY) [Bacillus sp. SDLI1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=166444 AUL54_RS02540 WP_013352252.1 587376..588155(-) (codY) [Bacillus sp. SDLI1]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCAGAAACGCTTCGCGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAACCTTTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATATACGGCTTTCCCTGTTGAAAACAGAGACCTGTTCCA
AGCAGGCTTAACGACGATTGTGCCGATTATCGGCGGAGGAGAGCGCCTGGGCACATTGATCCTGTCCCGTCTGCAGGACC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCAGAA
GAGATCGAAGAAGAAGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTTTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTACTTGTGGCAAGTAAGATTGCCGACCGTGTAGGCATTACCC
GTTCAGTCATCGTTAACGCACTGAGAAAGCTCGAAAGCGCCGGCGTTATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment