Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A7J08_RS04630 Genome accession   NZ_CP017088
Coordinates   915990..917732 (+) Length   580 a.a.
NCBI ID   WP_148115718.1    Uniprot ID   -
Organism   Streptococcus suis strain SRD478     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 910990..922732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS04610 (A7J08_04470) - 911559..912377 (+) 819 WP_002935241.1 NAD kinase -
  A7J08_RS04615 (A7J08_04475) - 912377..913270 (+) 894 WP_012027041.1 RluA family pseudouridine synthase -
  A7J08_RS04620 (A7J08_04480) pta 913288..914262 (+) 975 WP_002935239.1 phosphate acetyltransferase -
  A7J08_RS04625 (A7J08_04485) - 914264..916003 (+) 1740 WP_148115717.1 ABC transporter ATP-binding protein -
  A7J08_RS04630 (A7J08_04490) rcrQ 915990..917732 (+) 1743 WP_148115718.1 ABC transporter ATP-binding protein Regulator
  A7J08_RS04635 (A7J08_04495) - 917716..918108 (+) 393 WP_029681487.1 PaaI family thioesterase -
  A7J08_RS04640 (A7J08_04500) mutY 918286..919446 (+) 1161 WP_024402183.1 A/G-specific adenine glycosylase -
  A7J08_RS04645 (A7J08_04505) - 920110..920910 (-) 801 WP_024383594.1 XRE family transcriptional regulator -
  A7J08_RS04650 (A7J08_04510) - 921041..921511 (+) 471 WP_148115719.1 hypothetical protein -
  A7J08_RS04655 (A7J08_04515) - 921531..922073 (+) 543 WP_148115878.1 hypothetical protein -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64483.73 Da        Isoelectric Point: 5.7242

>NTDB_id=166024 A7J08_RS04630 WP_148115718.1 915990..917732(+) (rcrQ) [Streptococcus suis strain SRD478]
MRQASFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGILGKMVMVILLNTLMQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRHSVGDLVARFSSDSEQLTNGLLMIFNQFFIGILTIFLTIFTMARLDLTMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLEESISQLTLVQSFNAQEQFTQGFQVVNDQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALGSID
DQAERKIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVPI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLLQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQAADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSRQTEEDESVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=166024 A7J08_RS04630 WP_148115718.1 915990..917732(+) (rcrQ) [Streptococcus suis strain SRD478]
ATGAGACAAGCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTGGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTTGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTCGGTATCTTAGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGATGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTATGGAATGGTGGCCGACTTGCGTGAACAGGTTTATGTTAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATCGTCATTCAGTTGGTGATTTAGTAGCTCGTTTTTCAAGTGATAGTGAGCAATTAACAAATGGTCTCTTGATGA
TTTTCAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGACGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAGGCAATCTCAGCTTTTGGAAGAGTCCATCAGTCAATTGACACTAGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGGTTTCAAGTTGTGAATGACCAGTATGCGACCTATTCCCAACAGGCCATCTTTGCCTCT
TCAACGGTCAATCCAAGCACTCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATCCCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTATTTGCTATCTTGGCTCTAGGTAGCATTGAC
GATCAGGCTGAGCGGAAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGATAATGTGTCTTTCTCCTATAGTCC
TGACCGTTCTCTGATAGAACATTTGGACATTGATGTCAAAGCTGGACAAAAGGTAGCCATCGTTGGGCCGACGGGAGCAG
GAAAATCTACCATGATAAATCTCCTCATGCGTTTCTACGATGTGACGGCTGGTCAGATTGTCTTAGATGGGGTTCCGATT
AGCCAGTACAGTCGCGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAAACCTGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAACTTCTACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTTAAAATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAAGCAGCTGACTTGATTTTGGTCATGGTGGATGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCGGCAGACAGAGGAGGATGAAAGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.801

97.759

0.379

Multiple sequence alignment