Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BARD7_RS03875 Genome accession   NZ_CP016913
Coordinates   815247..817064 (+) Length   605 a.a.
NCBI ID   WP_065980966.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 810247..822064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS03865 (BARD7_00786) - 810919..813246 (+) 2328 WP_065980964.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  BARD7_RS03870 (BARD7_00787) - 813533..815266 (+) 1734 WP_065980965.1 ABC transporter ATP-binding protein -
  BARD7_RS03875 (BARD7_00788) rcrQ 815247..817064 (+) 1818 WP_065980966.1 ABC transporter ATP-binding protein Regulator
  BARD7_RS03880 (BARD7_00789) - 817231..817635 (+) 405 WP_065980967.1 DoxX family protein -
  BARD7_RS03885 (BARD7_00790) - 817652..818509 (+) 858 WP_065980968.1 VOC family protein -
  BARD7_RS03890 (BARD7_00791) cyoE 818812..819759 (+) 948 WP_065980969.1 heme o synthase -
  BARD7_RS03895 (BARD7_00792) - 819795..820346 (-) 552 WP_065980970.1 PadR family transcriptional regulator -
  BARD7_RS03900 (BARD7_00793) - 820585..821187 (+) 603 WP_065980971.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67635.45 Da        Isoelectric Point: 9.6319

>NTDB_id=165262 BARD7_RS03875 WP_065980966.1 815247..817064(+) (rcrQ) [Bacillus amyloliquefaciens strain RD7-7]
MQKDIRKPFRYPKIPLKSNEGGRKRTKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAVFGLLGPFVIGKAIDHFIVG
RTTDGLAGVLFILFVIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMFLSIKWITSRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALKSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKQEREDEEHALYQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNEGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDLEVEEAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=165262 BARD7_RS03875 WP_065980966.1 815247..817064(+) (rcrQ) [Bacillus amyloliquefaciens strain RD7-7]
GTGCAGAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCACGAA
AGCAAAAGATACAAAAGGCACACTGCGCAGGATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTGACCCTTGTGATCA
TTATGGTAGTCATAAGCGCCGTATTTGGTCTCCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGG
CGGACGACAGACGGATTGGCGGGGGTGCTGTTCATACTGTTTGTGATTTACCTCGTGCAATCTTTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATTTCTCAAAGCACTGTGTTTAAAATGAGGAGCGAGCTGTTTACTCATCTGCATGAACTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGCGACTTGATGAGCCGGGTCACCAATGATATTGAAAATGTCAGCTCCACT
TTAAATACATCAGTCATTCAGGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGCCC
GCTTTTAACATTGATCACACTCTTGATTATTCCGATCATGTTTTTGAGCATCAAATGGATCACCAGCCGGACGGGACTGC
TCTTTAAGCAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGAGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAGCAATTTTTAGAAAAAAACGCGGCGTTAAAATCATCGGGATTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTAATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAAGGGTGGATCTCAATCGGATCCATCGTCGTATTCGCTGAATACTCGCGGCAGTTCACGCGCCCTCTG
AATGATTTAGCCAATCAGTTCAACACGATGTTATCGGCCATCGCAGGGGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
ACAGGAGCGGGAAGACGAAGAGCATGCGCTGTACCAGCCGATCAAAACAGGAGAGATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACATCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTTGTCGGCCCG
ACCGGAGCGGGTAAAACAACTGTCACAAGCCTGATCGCCCGCTTTTACGAGCCGAATGAAGGGAAAATTCTTATCGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAATATGGGGTTTGTCCTGCAGGATTCCTTTCTTTTTCAAG
GCACCATCAGGGAAAATATCCGCTACGGCCGCTTGGATGCATCTGACCTAGAGGTGGAGGAAGCCGCTAAAGCCGCCAAT
GCCCACGGCTTCATTGAACGGCTCCCCAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGCCA
AAAACAGCTCATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTTCTGCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACGAGCGTCATCATCGCTCACAGG
CTGAACACAATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGTTTTTACCGGGAATTATATGAAAGCCAGTTCAGGGAATCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.422

96.364

0.37