Detailed information NTG0165023

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BEN15_RS02660
• Genome accession: NZ_CP016877
• Coordinates: 512848..514116 (-)
• Length: 422 a.a.
• NCBI ID: WP_002952183.1
• Uniprot ID: Q5M295
• Organism: Streptococcus thermophilus strain KLDS 3.1003
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 507848..519116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN15_RS02635 (BEN15_02640)	-	508947..510146 (+)	1200	WP_196767753.1	radical SAM protein	-
BEN15_RS02640 (BEN15_02645)	-	510139..511680 (+)	1542	WP_065972666.1	ATP-binding cassette domain-containing protein	-
BEN15_RS02645 (BEN15_02650)	-	512011..512406 (+)	396	Protein_509	tyrosine-type recombinase/integrase	-
BEN15_RS02660 (BEN15_02665)	rarA	512848..514116 (-)	1269	WP_002952183.1	replication-associated recombination protein A	Machinery gene
BEN15_RS02665 (BEN15_02670)	rpmB	514286..514474 (+)	189	WP_002952184.1	50S ribosomal protein L28	-
BEN15_RS02670 (BEN15_02675)	-	514601..514867 (+)	267	WP_011681731.1	IreB family regulatory phosphoprotein	-
BEN15_RS02675 (BEN15_02680)	ruvX	514867..515286 (+)	420	WP_002952187.1	Holliday junction resolvase RuvX	-
BEN15_RS02680 (BEN15_02685)	-	515395..515700 (+)	306	WP_011681733.1	DUF1292 domain-containing protein	-
BEN15_RS02685 (BEN15_02690)	-	515913..517559 (+)	1647	WP_065972668.1	hypothetical protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46419.92 Da
• Isoelectric Point: 6.8977

>NTDB_id=165023 BEN15_RS02660 WP_002952183.1 512848..514116(-) (rarA) [Streptococcus thermophilus strain KLDS 3.1003]
MPDNLALRMRPRSISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
NVLGDKERGFAFEVHLDDDALDFIATATNGDLRSAYNSLDLAVMSTPASGNGQHHITLDIVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYKAMDAALADLRKSGNLPIPRHLRDGHYAGSKALGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide

• Length: 1269 bp

>NTDB_id=165023 BEN15_RS02660 WP_002952183.1 512848..514116(-) (rarA) [Streptococcus thermophilus strain KLDS 3.1003]
ATGCCAGATAATCTTGCCTTACGCATGCGTCCACGTTCAATTTCAGAGGTGATTGGTCAGAAACATTTAGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAGGCGAATATGCTGTCGTCAATGATTCTCTACGGACCTCCAGGAATCGGGAAAACCT
CGATAGCCAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACTTTTAATGCCACTGTCGATAGCAAAAAACGTCTA
CAGGAAATTGCAGAAGAGGCTAAATTTTCAGGTGGTTTAGTTCTACTTCTAGATGAGATCCATCGTTTGGATAAAGCGAA
ACAAGATTTTTTGTTACCATTATTAGAGAACGGAAATATTATCATGATTGGTGCCACAACCGAGAATCCGTTTTTTTCTG
TAACACCAGCCATCCGTAGCCGTGTACAAATATTTGAGTTGGAACCACTCTCTAATGAAGATATCAAGGAAGCTATTTTG
AATGTTCTAGGGGACAAGGAGCGTGGCTTCGCCTTTGAGGTTCACTTAGATGATGATGCTCTAGATTTTATTGCGACAGC
TACTAATGGTGATTTACGATCGGCATATAATTCTTTGGATCTGGCTGTCATGTCGACACCAGCTTCAGGAAATGGTCAGC
ATCATATTACCTTAGACATAGTGGAAAATAGCTTACAACGCAGTTATATTACTATGGATAAAGACGGTGATGGGCACTAT
GATGTCCTTTCTGCCTTGCAAAAATCTATTCGAGGATCTGATGTTAATGCCAGTCTTCACTATGCGGCACGTTTGGTTGA
GGCAGGGGATTTGCCTAGTCTAGCACGTCGCTTGACTGTGATTGCCTATGAGGATATTGGTTTAGCTAATCCAGATGCAC
AAGTTCACACGGTCACAGCCTTGGAAGCTGCACAGAAAATAGGTTTTCCGGAGGCACGTATTTTGATTGCCAACGTAGTT
ATTGACTTAGCATTATCACCTAAGTCGAATTCGGCTTATAAGGCAATGGATGCTGCCCTGGCGGATCTTAGAAAGTCTGG
GAATTTACCTATTCCGCGTCATCTGAGAGATGGACACTATGCTGGAAGTAAGGCACTGGGTAATGCACAAGATTATAAGT
ATCCACATGCCTATCCTGAAAAGTGGGTTAAGCAACAATACCTTCCAGATAAATTAAGAGGAGTCAATTATTTCCAACCT
AATGAAACTGGGAAATACGAAAGAGCTCTTGGAGCTAATAAAGAACGAATCGATAAGTTATCTAGATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (173-251)

• ATPase family associated with various cellular activities (AAA) (AAA) (42-144)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-415)

3D structure

• AlphaFold DB: Q5M295

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	59.666	99.289	0.592