Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC18_RS14950 Genome accession   NZ_CP013826
Coordinates   3093141..3093866 (+) Length   241 a.a.
NCBI ID   WP_053047780.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_018     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3088141..3098866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC18_RS14935 (FORC18_2750) - 3089244..3091565 (+) 2322 WP_029834186.1 Tex family protein -
  FORC18_RS14940 (FORC18_2751) - 3091701..3092165 (-) 465 WP_005459035.1 hypothetical protein -
  FORC18_RS14945 (FORC18_2752) bioH 3092289..3093056 (-) 768 WP_029786485.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC18_RS14950 (FORC18_2753) comF 3093141..3093866 (+) 726 WP_053047780.1 amidophosphoribosyltransferase Machinery gene
  FORC18_RS14955 (FORC18_2754) nfuA 3093964..3094548 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FORC18_RS14960 (FORC18_2755) nudE 3094769..3095338 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC18_RS14965 (FORC18_2756) cysQ 3095379..3096206 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC18_RS14970 (FORC18_2757) - 3096492..3097253 (-) 762 WP_042772205.1 type II secretion system protein N -
  FORC18_RS14975 (FORC18_2758) - 3097255..3097746 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27664.78 Da        Isoelectric Point: 8.8468

>NTDB_id=164915 FORC18_RS14950 WP_053047780.1 3093141..3093866(+) (comF) [Vibrio parahaemolyticus strain FORC_018]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDNCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=164915 FORC18_RS14950 WP_053047780.1 3093141..3093866(+) (comF) [Vibrio parahaemolyticus strain FORC_018]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATAACTGTTATCAATACCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTAGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment