Detailed information NTG0164476

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AVM03_RS06890
• Genome accession: NZ_CP013727
• Coordinates: 1527133..1529511 (-)
• Length: 792 a.a.
• NCBI ID: WP_058906208.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1522133..1534511

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS06860 (AVM03_06855)	-	1523205..1523933 (+)	729	WP_003152746.1	amino acid ABC transporter ATP-binding protein	-
AVM03_RS06865 (AVM03_06860)	-	1523954..1524781 (+)	828	WP_003152745.1	transporter substrate-binding domain-containing protein	-
AVM03_RS06870 (AVM03_06865)	-	1524838..1525488 (+)	651	WP_058906206.1	amino acid ABC transporter permease	-
AVM03_RS06875 (AVM03_06870)	-	1525507..1526163 (+)	657	WP_058906207.1	amino acid ABC transporter permease	-
AVM03_RS19545	-	1526199..1526330 (-)	132	WP_003152741.1	YrzQ family protein	-
AVM03_RS06880 (AVM03_06875)	-	1526352..1526543 (-)	192	WP_003152738.1	hypothetical protein	-
AVM03_RS06885 (AVM03_06880)	-	1526556..1527014 (-)	459	WP_017418223.1	PRC-barrel domain-containing protein	-
AVM03_RS06890 (AVM03_06885)	recD2	1527133..1529511 (-)	2379	WP_058906208.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AVM03_RS06895 (AVM03_06890)	-	1529530..1530150 (-)	621	WP_155589874.1	tetratricopeptide repeat protein	-
AVM03_RS06900 (AVM03_06895)	mnmA	1530238..1531353 (-)	1116	WP_058906210.1	tRNA 2-thiouridine(34) synthase MnmA	-
AVM03_RS06905 (AVM03_06900)	-	1531390..1532529 (-)	1140	WP_058906211.1	cysteine desulfurase family protein	-
AVM03_RS06910 (AVM03_06905)	cymR	1532548..1532964 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
AVM03_RS06915 (AVM03_06910)	-	1533159..1534427 (+)	1269	WP_032856906.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88348.04 Da
• Isoelectric Point: 4.9490

>NTDB_id=164476 AVM03_RS06890 WP_058906208.1 1527133..1529511(-) (recD2) [Bacillus amyloliquefaciens strain MBE1283]
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIETKQLIINTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIIVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSSQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=164476 AVM03_RS06890 WP_058906208.1 1527133..1529511(-) (recD2) [Bacillus amyloliquefaciens strain MBE1283]
GTGGATCAGCTGAACATCGAAGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTATCATAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACCTACACATTTTACGGAAAAACCGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTCAATAAAATTCTGGCTGATGCATCGGTGCTTT
ATGATGTGCCGAAAATGTCAAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGTCTCGAGCAGATT
ATGATCTCTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACCTTGGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAAGACGTTGAAGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCAATCTTATATACGATTGAATCGACCTGTCTTTCAGAG
GGCCATACGTACATAGAGACAAAGCAGCTGATTATCAATACGCAAACGCTCCTGAATCAGTCAGCTGAAGGCGGCCGCGT
CACGGAGATGGATGCGGCTGACGGCATCATCGCCCTCGGGGAGAGTAAGGATATCGTCATTGAAGGAGAGCGCTGCTATT
TTCCGTCCTTGTTTTACGCCGAACAAAACGTCGCAAAACGCGTGCTCGACATTGCGGCCCAGACGGAGTATGCCGATCAG
TTTCCTGAATCGGAATTTCTTCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCAAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACTGACCGGGGGACCGGGAACGGGGAAAACGACCGTTATTAAAG
GAATCGTGGAATTATACAGTGAACTGCACGGAGTATCGCTTGACCCTGGTGATTATAAAAAAGATGAAGCATTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGAATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATTCACAGGCT
GCTTGGCTGGAATGGCGCTGAAGGCTTTACCTATAATGAAGATCAGCCGATTGAAGGAAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTATAGTCGGTGAT
GAAGACCAGCTTCCTTCAGTAGGACCGGGGCAGGTGCTCAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTACGCCT
GACAGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAGG
GGCTGACCGCGCCGACAAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTGGACCAGGTCGTC
TCGAACGCGTTAAAAAAGGGGTATACCTCCAGAGATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAACATGCTTCTTCAGGACATCATGAATCCGCCTAAAGAAAAAAGGCGGGAGCTGAAATTCGGGGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAACGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCACGCGTACTGCTGTTCCATCCATAAGTCGCAGGGAAGCGAATTCCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATTACAAGAGCGAAAAAATTC
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACATCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGTGTATACG
ATGCGAACATCGGAATGGAAGGCATCACGCCTTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	89.128	99.874	0.89