Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AVJ22_RS07050 Genome accession   NZ_CP013714
Coordinates   1458985..1461381 (-) Length   798 a.a.
NCBI ID   WP_065338169.1    Uniprot ID   -
Organism   Staphylococcus equorum strain C2014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453985..1466381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVJ22_RS07030 (AVJ22_07020) - 1454890..1455222 (-) 333 WP_002507440.1 DUF1292 domain-containing protein -
  AVJ22_RS07035 (AVJ22_07025) ruvX 1455239..1455667 (-) 429 WP_002507439.1 Holliday junction resolvase RuvX -
  AVJ22_RS07040 (AVJ22_07030) - 1455671..1455931 (-) 261 WP_002507438.1 IreB family regulatory phosphoprotein -
  AVJ22_RS07045 (AVJ22_07035) alaS 1456001..1458631 (-) 2631 WP_065338168.1 alanine--tRNA ligase -
  AVJ22_RS07050 (AVJ22_07040) recD2 1458985..1461381 (-) 2397 WP_065338169.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AVJ22_RS07055 (AVJ22_07045) - 1461385..1462050 (-) 666 WP_065338170.1 tetratricopeptide repeat protein -
  AVJ22_RS07060 (AVJ22_07050) mnmA 1462175..1463287 (-) 1113 WP_021339128.1 tRNA 2-thiouridine(34) synthase MnmA -
  AVJ22_RS07065 (AVJ22_07055) - 1463288..1464430 (-) 1143 WP_065338171.1 cysteine desulfurase family protein -
  AVJ22_RS07070 (AVJ22_07060) sal 1464491..1466128 (-) 1638 WP_231111833.1 Sal family ABC-F type ribosomal protection protein -
  AVJ22_RS14590 - 1466192..1466332 (-) 141 WP_196769849.1 hypothetical protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89802.55 Da        Isoelectric Point: 4.5127

>NTDB_id=164284 AVJ22_RS07050 WP_065338169.1 1458985..1461381(-) (recD2) [Staphylococcus equorum strain C2014]
MEDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIETNEDFDSMPTIVGFFPEIAEGDVYTFKGQVVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPAVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLKVVENTPYQLVYDVKGIGFNKADALARNVGIQFNDDERLKAGLLYVLEEECIKQG
HTYLPTNNVIEMTQDMLSQPPAEMIDTQQLINVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTHTNKLKEIE
QSELLLEIGEIENRNEVTYADSQRDALQTAINTKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILENEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEAIDITQRFHDRNFIKCTTEQIPTVVEKVVTSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKDKDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDILVVDFEGNEITFVRKDLLELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLIFL
GDPQAFDIGLKTHGQVRMTQLCTFLKTYFNNEVTEDAEDSIAISKTIDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=164284 AVJ22_RS07050 WP_065338169.1 1458985..1461381(-) (recD2) [Staphylococcus equorum strain C2014]
ATGGAAGACCCTACATTATTTAACAATTCAATGATTAAAGGAACCGTGGATGCTATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAGGTAGATACAATTGAAACAAATGAAGATTTCGATTCAATGCCTACAATTGTAGGGTTTTTCCCGG
AAATTGCTGAAGGTGATGTCTATACGTTTAAAGGCCAAGTTGTAACACATTCTAAATATGGTAAGCAACTCAAAGCTGAA
ACGTTTGAAAAAGAGCTGCCGCAAACAAAAGAAGCAATCATTAGTTATTTATCCAGCGATCTTTTTAAAGGTATTGGTAA
AAAAACTGCACAAAGTATTGTAAATAAGTTAGGCGAGAATGCCATTAGTGATATATTAAATGATCCTGCTGTTTTAGAAA
AAGTCCCGAGTCTACCAAAAAAGAAACAAAAGCAAATCGCAGAACAAATCGCCAGTAATCAAGAAACAGAACAAATCATT
ATACGACTTCATGACTTAGGTTTTGGTCCAAAGCTTGCTATGGCAATATACCAAGCCTATTTAGGCGAGACACTTAAAGT
TGTTGAAAATACACCATACCAATTGGTTTATGATGTAAAAGGAATCGGTTTTAATAAAGCAGATGCTTTAGCACGTAACG
TGGGAATTCAATTTAATGATGATGAACGACTGAAAGCTGGTTTGTTATATGTTTTAGAAGAAGAATGTATTAAACAAGGT
CATACATATTTACCTACAAATAATGTTATAGAAATGACACAAGATATGTTGTCTCAACCACCAGCAGAAATGATTGATAC
ACAACAACTTATAAATGTATTGCAAGATTTGGTAAATGATACGAAATTAATCCAACAAGAAAATGAAGTTGCTATACCAA
GTTTGTATTATTCAGAGTTGAAAAGTGTTCAAAACTTATATCGCAATTTTACGCATACAAATAAATTAAAAGAAATTGAG
CAATCAGAATTATTGCTTGAAATTGGTGAAATAGAGAACCGTAATGAAGTAACATATGCCGACTCACAAAGAGACGCGCT
ACAAACTGCAATCAATACTAAAATCATGCTACTAACTGGTGGTCCAGGTACTGGTAAAACGACAGTAATCAAAGGTATCG
TAGAGCTATATGCAGAGATTCATGGTTTATCGTTAGACTATGATGATTACCAAAATGACGATTACCCAGTTGTGCTTGCG
GCACCTACTGGAAGAGCATCAAAGCGGCTTGCAGAATCTACAGGATTAGAAGCAATGACGATACATCGGCTCATTGGTTG
GAATCAAGATACACAACCTGAAGATATATTAGAAAATGAAATATCTGCAAAACTTATTATTATAGATGAGATGTCGATGG
TTGATACATGGCTTTTTCATCAATTTTTGAGTGCAGTACCTATAGACGCACAAGTTATATTAGTAGGTGATGAAGATCAA
TTACCATCTGTTGGTCCTGGACAAGTGTTTAAAGATTTAATCGATTCAAAAGTTATCCCCCGTGTCAATTTAACTGAAGT
ATACCGCCAACAAGACGGTTCTAGTATTATTGAGTTGGCACATAGAATGAAATTGGGGGAAGCAATTGATATTACACAGC
GTTTCCATGATCGTAACTTTATCAAATGTACGACTGAACAAATACCCACAGTAGTTGAAAAAGTAGTGACAAGTGCAGTA
AATAAAGGATATGACATGAGTGATATTCAGGTATTAGCACCTATGTATAAAGGTTCCGCAGGTATTAAAAAACTAAATAC
GGTCTTGCAAGATATATTGAACCCTAAAGACAAAGATACTCGAGAAATTGAGTTTGGTGATGTTGTTTTTAGAAAAGGAG
ATAAGGTTTTACAACTTGTGAACCGACCAAGTGATAATATTTTTAATGGTGATATCGGTGTAATCGTTGGTATATTTTGG
GCGAAAGAAAATGCATTAAATAAAGACATACTTGTCGTTGATTTTGAGGGCAATGAAATAACGTTTGTTCGAAAAGATCT
ATTAGAATTAACACATGCATATTGCACATCTATTCATAAGTCTCAGGGTTCTGAGTTTCCTATAGTCATCATGCCAATGG
TCAAACAATATTTTAGAATGTTACAAAAACCTATTTTATATACAGGGCTTACTCGAGCGAAGCAGTCGCTTATATTTTTA
GGTGACCCACAAGCATTTGATATTGGATTGAAAACACATGGTCAAGTGAGAATGACACAATTATGTACATTTCTGAAAAC
TTATTTCAATAACGAAGTAACTGAAGATGCTGAAGATAGTATTGCAATCAGTAAAACAATTGATGCAGATATCATTTTGA
CTGAAGATAATATCTTTAAAATTAACCCTATGATCAACATGGGAGACATTTCACCATACGACTTTGTAGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-718)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.376

100

0.504

Multiple sequence alignment