Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AUO94_RS01535 Genome accession   NZ_CP013661
Coordinates   298449..300866 (-) Length   805 a.a.
NCBI ID   WP_058385599.1    Uniprot ID   -
Organism   Planococcus kocurii strain ATCC 43650     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 293449..305866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUO94_RS01515 (AUO94_09845) - 294182..294490 (-) 309 WP_058385596.1 DUF1292 domain-containing protein -
  AUO94_RS01520 (AUO94_09850) ruvX 294504..294920 (-) 417 WP_058385597.1 Holliday junction resolvase RuvX -
  AUO94_RS01525 (AUO94_09855) - 294923..295189 (-) 267 WP_058386921.1 IreB family regulatory phosphoprotein -
  AUO94_RS01530 (AUO94_09860) alaS 295279..297903 (-) 2625 WP_058385598.1 alanine--tRNA ligase -
  AUO94_RS01535 (AUO94_09865) recD2 298449..300866 (-) 2418 WP_058385599.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AUO94_RS01540 (AUO94_09870) - 300891..301550 (-) 660 WP_058385600.1 tetratricopeptide repeat protein -
  AUO94_RS01545 (AUO94_09875) mnmA 301565..302680 (-) 1116 WP_058385601.1 tRNA 2-thiouridine(34) synthase MnmA -
  AUO94_RS01550 (AUO94_09880) - 302694..303827 (-) 1134 WP_058385602.1 cysteine desulfurase family protein -
  AUO94_RS01555 (AUO94_09885) cymR 303842..304258 (-) 417 WP_058385603.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 89859.04 Da        Isoelectric Point: 5.0891

>NTDB_id=163634 AUO94_RS01535 WP_058385599.1 298449..300866(-) (recD2) [Planococcus kocurii strain ATCC 43650]
MTGQIDLFQEEKQFVLGRPVVSIFHNPQNLFSIAKVKIQETNTPYTEKEIIVSGYFPMLTLEEQYRFTGVVKNHPRYGVQ
FQVETFTKEVPETEQGIIHYLSSDMFNGIGRKTAETIVKKLGKDAIKKILEDPDALDKVPRLSDDKKDTIRATLQMNLGL
ERVMIQLNDWGFGPQVGMRIYQAYREETIEILTKNPFQLIEEIEGIGFQRADELGTKLGITGSHPDRIKAAILHILNQAS
LSEGHVYVDAKTLIPLVKEMLESRQQGEIAIEAISKAAIELNEESKVAGEETRLYLPSLYYSEVGIATKLETLLAEQENR
TKFPSSEVRKALGEAEERLGVNYAETQVDAIENSINSSVMILTGGPGTGKTTVVRGLVEIYAELHGLSLDPKEYAKKKEP
FPIILAAPTGRAAKRLSESTDLPAMTIHRLLGFNGQEKDEETEKEIEGKLIIIDEMSMVDTWLAHQLLKAVPEDAQLIFV
GDQDQLPPVGPGQVLRDLLESKRIPTVELTDIYRQASGSSIIELAHQMKNGQLPEDITVKTADRSFIKAGADQIPAVVEK
VVRSALSKGHSIKDIQVLAPMYKGPAGIDALNRLIQEMVNPNPDGKRKELAFGDITYRIGDKVLQLVNQPESNVFNGDMG
EIVAIMKAKETVEKQDMLVASFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRGYMKMLRRNLLYTGITRS
RDFLILCGDPSVFRYGVERTDDAQRMTTLKSRLAVTTEQPKTEQQTKQQVETEQCGPVSLTAENVHAIHPMIGMEGITPQ
KFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=163634 AUO94_RS01535 WP_058385599.1 298449..300866(-) (recD2) [Planococcus kocurii strain ATCC 43650]
ATGACCGGACAAATCGATTTATTTCAAGAAGAAAAACAGTTTGTATTAGGGCGTCCTGTCGTCTCGATTTTTCACAATCC
TCAAAACTTATTCTCCATAGCCAAAGTGAAAATTCAAGAAACCAACACCCCGTACACTGAAAAAGAAATTATTGTATCTG
GCTATTTTCCGATGTTAACGCTCGAAGAACAGTATCGTTTTACAGGCGTCGTGAAAAATCATCCGCGTTATGGTGTTCAA
TTCCAAGTAGAAACGTTTACGAAAGAAGTACCAGAAACCGAACAAGGAATTATTCATTACTTGTCCAGTGATATGTTTAA
CGGCATTGGCCGGAAAACAGCAGAAACAATCGTCAAAAAACTCGGCAAAGATGCGATCAAGAAAATTCTTGAAGACCCTG
ATGCATTAGATAAAGTGCCGCGGTTGTCAGATGATAAAAAAGACACCATTCGCGCCACTTTACAGATGAATCTCGGTCTG
GAGCGTGTGATGATTCAGCTCAACGACTGGGGCTTTGGCCCTCAAGTGGGCATGCGAATTTATCAAGCTTACCGCGAAGA
AACCATTGAAATTTTGACGAAAAATCCTTTTCAGCTGATTGAAGAAATCGAAGGAATCGGTTTTCAACGTGCCGACGAAC
TCGGAACCAAGCTTGGCATCACTGGCAGTCATCCGGACCGAATCAAAGCGGCAATTTTGCACATTCTAAACCAAGCTTCT
CTGTCTGAAGGCCATGTCTATGTAGACGCTAAAACCTTGATTCCGCTAGTTAAGGAAATGCTCGAATCACGTCAGCAAGG
AGAAATTGCGATTGAAGCGATTTCGAAAGCTGCTATCGAATTAAATGAAGAAAGTAAAGTCGCAGGCGAAGAAACGCGGC
TTTATTTGCCATCGCTGTATTATTCAGAAGTTGGAATTGCGACGAAACTGGAAACTTTACTGGCCGAACAAGAAAATCGC
ACAAAGTTTCCAAGTTCAGAAGTTCGTAAAGCGCTTGGTGAAGCAGAGGAACGTCTTGGTGTGAATTATGCAGAAACGCA
AGTTGACGCGATTGAAAACAGTATTAATTCATCGGTCATGATTTTAACGGGTGGACCGGGTACCGGTAAGACCACGGTTG
TCCGCGGATTGGTGGAAATCTATGCAGAACTGCACGGGTTGTCACTCGATCCGAAAGAATACGCCAAGAAAAAAGAGCCG
TTTCCCATTATCCTAGCAGCACCAACGGGACGTGCGGCCAAGCGCTTGAGTGAATCCACTGACCTACCGGCAATGACAAT
CCACCGTTTATTAGGCTTTAATGGGCAAGAAAAAGACGAAGAAACCGAAAAAGAAATCGAAGGCAAATTAATTATTATCG
ATGAAATGTCGATGGTTGATACGTGGCTTGCTCATCAATTGCTAAAAGCAGTACCAGAAGACGCACAGCTAATTTTCGTT
GGAGACCAAGATCAATTGCCGCCGGTTGGTCCCGGACAAGTGCTAAGAGATTTACTCGAATCAAAACGGATTCCGACTGT
TGAGCTAACCGATATTTACCGACAAGCGTCAGGTTCCTCCATCATTGAACTCGCCCATCAAATGAAAAATGGACAATTGC
CTGAAGACATCACTGTAAAGACGGCCGATCGTTCATTTATCAAAGCGGGAGCCGACCAAATTCCTGCTGTTGTTGAAAAG
GTTGTGAGGAGTGCCTTGTCGAAAGGTCATTCGATTAAAGACATTCAAGTGCTTGCTCCGATGTATAAAGGACCAGCCGG
AATCGATGCTTTGAACCGTCTGATTCAAGAAATGGTCAACCCGAATCCGGATGGCAAACGAAAAGAATTAGCATTTGGTG
ACATTACGTACCGCATCGGTGATAAAGTGTTGCAGCTCGTCAATCAACCAGAAAGCAATGTCTTTAATGGTGACATGGGT
GAAATTGTCGCTATTATGAAAGCCAAAGAAACCGTTGAAAAACAAGACATGTTAGTGGCGTCTTTTGACGGCATTGAAGT
AACTTATGAACGCAGCGATTTAAACCAACTCACGCTAGCATACTGTTGTTCGATCCATAAGTCACAAGGATCTGAATTTC
CAACTGTCATCATGCCAGTAGTTCGGGGCTACATGAAAATGTTGCGCCGCAATTTGCTTTACACGGGTATTACTCGGAGT
AGGGATTTTCTTATTCTCTGTGGAGATCCAAGCGTCTTCCGTTACGGAGTTGAACGCACGGACGACGCACAGCGCATGAC
CACATTAAAAAGCCGTCTAGCGGTCACAACCGAACAACCAAAAACCGAACAACAAACAAAGCAACAAGTCGAGACAGAAC
AATGCGGTCCCGTCAGTTTAACTGCCGAAAATGTCCACGCCATCCATCCAATGATTGGCATGGAAGGCATTACTCCACAA
AAGTTTATGGAAGCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(343-550)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-727)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-652)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.14

99.13

0.557

Multiple sequence alignment