Detailed information NTG0163530

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AT706_RS09900
• Genome accession: NZ_CP013654
• Coordinates: 1958583..1959362 (-)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain BSD-2
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1953583..1964362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT706_RS09870 (AT706_09870)	fliH	1953601..1954353 (-)	753	WP_015383659.1	flagellar assembly protein FliH	-
AT706_RS09875 (AT706_09875)	fliG	1954346..1955362 (-)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
AT706_RS09880 (AT706_09880)	fliF	1955375..1956985 (-)	1611	WP_015483223.1	flagellar basal-body MS-ring/collar protein FliF	-
AT706_RS09885 (AT706_09885)	fliE	1957031..1957351 (-)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
AT706_RS09890 (AT706_09890)	flgC	1957362..1957814 (-)	453	WP_014479779.1	flagellar basal body rod protein FlgC	-
AT706_RS09895 (AT706_09895)	flgB	1957814..1958203 (-)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
AT706_RS09900 (AT706_09900)	codY	1958583..1959362 (-)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AT706_RS09905 (AT706_09905)	hslU	1959402..1960805 (-)	1404	WP_014476801.1	HslU--HslV peptidase ATPase subunit	-
AT706_RS09910 (AT706_09910)	clpQ	1960822..1961367 (-)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
AT706_RS09915 (AT706_09915)	xerC	1961380..1962294 (-)	915	WP_015383656.1	tyrosine recombinase XerC	-
AT706_RS09920 (AT706_09920)	trmFO	1962362..1963669 (-)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=163530 AT706_RS09900 WP_003220850.1 1958583..1959362(-) (codY) [Bacillus subtilis subsp. subtilis strain BSD-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=163530 AT706_RS09900 WP_003220850.1 1958583..1959362(-) (codY) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467