Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ATM98_RS01190 Genome accession   NZ_CP013651
Coordinates   224176..224988 (+) Length   270 a.a.
NCBI ID   WP_185759936.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 219176..229988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS01160 (ATM98_01160) - 219415..220296 (+) 882 WP_061563780.1 F0F1 ATP synthase subunit gamma -
  ATM98_RS01165 (ATM98_01165) atpD 220385..221791 (+) 1407 WP_061563781.1 F0F1 ATP synthase subunit beta -
  ATM98_RS01170 (ATM98_01170) - 221805..222224 (+) 420 WP_061563782.1 F0F1 ATP synthase subunit epsilon -
  ATM98_RS01175 (ATM98_01175) - 222312..222542 (+) 231 WP_061563783.1 DUF1146 family protein -
  ATM98_RS01180 (ATM98_01180) murA 222609..223892 (+) 1284 WP_006596619.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ATM98_RS01185 (ATM98_01185) - 223882..224070 (+) 189 WP_006596916.1 DNA-directed RNA polymerase subunit beta -
  ATM98_RS01190 (ATM98_01190) endA 224176..224988 (+) 813 WP_185759936.1 DNA/RNA non-specific endonuclease Machinery gene
  ATM98_RS01195 (ATM98_01195) - 225155..225874 (+) 720 WP_006596616.1 matrixin family metalloprotease -
  ATM98_RS01200 (ATM98_01200) - 225877..226248 (+) 372 WP_040803097.1 hypothetical protein -
  ATM98_RS01205 (ATM98_01205) abc-f 226331..228238 (+) 1908 WP_061563784.1 ABC-F type ribosomal protection protein -
  ATM98_RS01210 (ATM98_01210) - 228447..228803 (+) 357 WP_061563785.1 hypothetical protein -
  ATM98_RS01215 (ATM98_01215) - 228808..229671 (+) 864 WP_061563786.1 XRE/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 29604.14 Da        Isoelectric Point: 8.9578

>NTDB_id=163394 ATM98_RS01190 WP_185759936.1 224176..224988(+) (endA) [Streptococcus sp. A12]
MKKSGQTLLGLVVAAALSIGGYYFSQPQPVASHSQVQTVVTSSQEATPSKELAESVLTDSVRAKLGKNIQWNEAGAFIIN
QNKTNLDADVASLPYADTKTKTVKGREIPTVANALMTKATRQYQKREQTDVDWAPAGWHQVTNLAGEYDHAVDRGHLLGY
ALIGNLDGFDASMTNPKNIAVQTAWANQARDSFSTGQNYYETLVRKALDKNKRVRYRVTLYYASDEDLVPVGSQIEAKSS
DGSLEFNVFVPNVQSGISLDYRTGKVTVHR

Nucleotide


Download         Length: 813 bp        

>NTDB_id=163394 ATM98_RS01190 WP_185759936.1 224176..224988(+) (endA) [Streptococcus sp. A12]
ATGAAAAAATCAGGACAAACTCTACTGGGCTTGGTGGTGGCAGCAGCCCTTTCCATCGGTGGCTATTACTTTAGTCAACC
CCAGCCAGTCGCTAGTCACTCTCAGGTTCAAACGGTTGTTACTTCGAGTCAAGAAGCAACACCGAGTAAGGAACTAGCGG
AGAGTGTTCTGACAGATAGTGTTCGAGCTAAACTAGGAAAAAACATTCAATGGAATGAAGCAGGCGCTTTCATCATTAAC
CAGAATAAAACCAATCTGGATGCGGATGTTGCTAGTCTCCCTTATGCAGATACTAAGACAAAGACTGTAAAAGGACGAGA
GATTCCAACAGTTGCCAATGCTTTGATGACCAAGGCGACTCGTCAATACCAAAAAAGGGAACAGACGGATGTAGATTGGG
CTCCCGCTGGCTGGCACCAAGTAACCAATTTAGCTGGGGAATATGACCATGCGGTCGATCGGGGCCATCTTCTCGGCTAT
GCCTTGATTGGCAACTTAGATGGGTTTGATGCCTCGATGACGAATCCTAAAAATATTGCGGTTCAAACAGCTTGGGCCAA
CCAAGCGCGTGACAGTTTTTCAACGGGACAAAATTACTATGAAACCCTTGTTCGGAAGGCCTTAGATAAAAATAAGCGGG
TCCGTTATAGGGTGACTCTCTACTATGCTTCAGATGAAGATTTGGTACCAGTTGGCAGTCAAATTGAAGCAAAATCGAGT
GATGGCAGTCTAGAGTTTAACGTTTTTGTTCCAAATGTCCAGAGTGGGATTAGTTTGGATTATCGTACTGGAAAAGTAAC
AGTGCATCGCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(75-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

66.544

100

0.67
  endA Streptococcus pneumoniae D39

66.544

100

0.67
  endA Streptococcus pneumoniae R6

66.544

100

0.67
  endA Streptococcus pneumoniae TIGR4

66.544

100

0.67

Multiple sequence alignment