Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | AT730_RS09450 | Genome accession | NZ_CP013484 |
| Coordinates | 2040204..2040719 (-) | Length | 171 a.a. |
| NCBI ID | WP_064368814.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain ATCC 33787 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2035204..2045719
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AT730_RS09435 (AT730_09415) | aroB | 2036595..2037695 (-) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
| AT730_RS09440 (AT730_09420) | aroK | 2037728..2038246 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| AT730_RS09445 (AT730_09425) | - | 2038434..2040178 (-) | 1745 | Protein_1841 | type IV pilus secretin PilQ | - |
| AT730_RS09450 (AT730_09430) | pilP | 2040204..2040719 (-) | 516 | WP_064368814.1 | pilus assembly protein PilP | Machinery gene |
| AT730_RS09455 (AT730_09435) | pilO | 2040709..2041302 (-) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AT730_RS09460 (AT730_09440) | pilN | 2041295..2041870 (-) | 576 | WP_064368815.1 | PilN domain-containing protein | Machinery gene |
| AT730_RS09465 (AT730_09445) | pilM | 2041854..2042870 (-) | 1017 | WP_017821733.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| AT730_RS09470 (AT730_09450) | - | 2043015..2045576 (+) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19095.27 Da Isoelectric Point: 10.4342
>NTDB_id=163008 AT730_RS09450 WP_064368814.1 2040204..2040719(-) (pilP) [Vibrio alginolyticus strain ATCC 33787]
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRTPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
MTSKSLLLVLMGSLLMGCQANDESLTDFIRGVETQARREVEKLKPADKYVAVTYAPEVQRTPFELPKEATIATQPVARKD
CWQPPSRRRTGKLEKFPLSQLRLKGVMGMDNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=163008 AT730_RS09450 WP_064368814.1 2040204..2040719(-) (pilP) [Vibrio alginolyticus strain ATCC 33787]
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTACACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCACTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGACAAGTAAGTCTTTGTTGCTGGTACTGATGGGTTCTCTATTGATGGGCTGCCAGGCGAATGATGAATCATTGACGGA
TTTTATTCGAGGAGTGGAAACACAGGCGCGTCGAGAGGTCGAGAAGCTTAAGCCCGCAGACAAATATGTTGCAGTCACGT
ACGCACCGGAAGTACAGCGTACACCCTTTGAATTACCCAAAGAAGCCACCATCGCGACTCAGCCAGTTGCAAGAAAAGAT
TGTTGGCAACCGCCCTCAAGAAGGCGAACTGGCAAATTAGAAAAATTCCCACTAAGCCAATTACGTTTGAAAGGTGTCAT
GGGCATGGATAACACGGTTTCTGGCCTCGTTCAGGCTCCCAATGGCACCGTCTATAAAGTTAAGCCGGGTCAATACCTCG
GACGCAATAATGGCAAAGTGACCCATGTCAGCCACTCCTATTTGTTGATTAATGAAACGTTGCCCGACGGCTTAGGATGT
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.211 |
100 |
0.842 |
| pilP | Vibrio cholerae strain A1552 |
56.977 |
100 |
0.573 |