Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ATD26_RS07930 Genome accession   NZ_CP013352
Coordinates   1761830..1762783 (+) Length   317 a.a.
NCBI ID   WP_033127883.1    Uniprot ID   -
Organism   Clostridium butyricum strain JKY6D1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1756830..1767783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATD26_RS07905 (ATD26_07905) - 1756949..1757629 (-) 681 WP_002579991.1 TIGR00266 family protein -
  ATD26_RS07910 (ATD26_07910) - 1757865..1758362 (+) 498 WP_035762898.1 hypothetical protein -
  ATD26_RS07915 (ATD26_07915) - 1758619..1759572 (+) 954 WP_058141929.1 L-lactate dehydrogenase -
  ATD26_RS07920 (ATD26_07920) - 1759622..1761121 (+) 1500 WP_003427750.1 sodium:solute symporter family protein -
  ATD26_RS07925 (ATD26_07925) - 1761187..1761495 (+) 309 WP_002579995.1 hypothetical protein -
  ATD26_RS07930 (ATD26_07930) ceuB 1761830..1762783 (+) 954 WP_033127883.1 ABC transporter permease Machinery gene
  ATD26_RS07935 (ATD26_07935) - 1762773..1763729 (+) 957 WP_003411943.1 iron chelate uptake ABC transporter family permease subunit -
  ATD26_RS07940 (ATD26_07940) - 1763810..1764565 (+) 756 WP_045144106.1 ABC transporter ATP-binding protein -
  ATD26_RS07945 (ATD26_07945) - 1764642..1765580 (+) 939 WP_045144107.1 siderophore ABC transporter substrate-binding protein -
  ATD26_RS07950 (ATD26_07950) tyrS 1766373..1767578 (+) 1206 WP_002580000.1 tyrosine--tRNA ligase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34523.82 Da        Isoelectric Point: 10.0188

>NTDB_id=162228 ATD26_RS07930 WP_033127883.1 1761830..1762783(+) (ceuB) [Clostridium butyricum strain JKY6D1]
MSKKILIPMFIILCIISLFIGVNDISVMDIINFDSEKINILLISRLPRLVGLVVAGVGMSIGGVIMQQISNNKFVSPTTA
ATLDSAQFGVIVAMMIFPVASLTQKMIVAFIFSLIGTFLFMGILKKIKMKNAIFIPLVGIMVGNVIGSLTEFIAYKNNLV
QNVGSFFQGKFALVIKGNYEMLYFTIPLLIVAFMYANKFTIIGMGEDISKNLGLDYKKVSNIGITIVALVSALVIITVGN
IPFIGLIVPNLVSLFNGDNVSKNIGITALFGANFVILCDIIGRLVIYPYEVSISLTVGVIGSIIFLYLILRRNRNEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=162228 ATD26_RS07930 WP_033127883.1 1761830..1762783(+) (ceuB) [Clostridium butyricum strain JKY6D1]
ATGAGTAAAAAAATATTAATACCGATGTTTATTATATTGTGTATAATTTCACTGTTCATTGGAGTGAACGACATATCAGT
AATGGATATAATAAACTTTGATAGTGAGAAAATAAATATTTTATTGATAAGCAGATTACCAAGACTTGTTGGGCTTGTTG
TTGCTGGTGTTGGAATGAGTATCGGTGGAGTGATAATGCAGCAGATAAGTAACAACAAATTTGTATCACCCACAACAGCA
GCAACTCTTGATTCAGCACAATTTGGTGTAATTGTAGCTATGATGATTTTCCCAGTTGCATCTTTAACGCAAAAGATGAT
TGTAGCCTTTATATTTTCACTTATAGGAACATTTTTATTTATGGGAATTCTAAAAAAGATAAAGATGAAAAATGCCATAT
TCATACCACTTGTAGGGATTATGGTTGGAAATGTTATCGGATCACTTACAGAGTTTATAGCCTATAAGAATAACCTTGTT
CAAAATGTGGGATCTTTCTTTCAAGGTAAATTTGCACTTGTGATTAAAGGAAATTATGAAATGCTATATTTCACTATTCC
TTTGCTTATAGTGGCATTTATGTATGCAAACAAATTTACAATAATAGGTATGGGAGAAGATATTTCAAAAAATCTAGGTC
TTGATTATAAGAAAGTCAGTAATATTGGAATTACCATAGTGGCATTAGTTAGTGCACTGGTTATTATAACAGTAGGTAAT
ATACCATTTATAGGTTTAATTGTTCCAAATTTAGTATCACTTTTTAATGGAGATAATGTAAGTAAAAATATAGGAATTAC
AGCTTTGTTTGGAGCAAATTTTGTGATTTTATGTGACATAATTGGAAGACTTGTAATTTATCCATATGAGGTTTCAATAA
GTCTTACTGTAGGAGTTATAGGAAGTATAATATTCCTTTATTTAATATTAAGGAGAAATAGAAATGAAGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.882

98.738

0.483

Multiple sequence alignment