Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ASZ86_RS21210 Genome accession   NZ_CP013319
Coordinates   2946870..2947730 (+) Length   286 a.a.
NCBI ID   WP_335722511.1    Uniprot ID   -
Organism   Vibrio cholerae strain NCTC9420     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2941870..2952730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASZ86_RS13875 (ASZ86_02767) greB 2942398..2942883 (-) 486 WP_000850496.1 transcription elongation factor GreB -
  ASZ86_RS13880 (ASZ86_02768) - 2943128..2945449 (+) 2322 WP_000030087.1 Tex family protein -
  ASZ86_RS13885 (ASZ86_02769) - 2945541..2946011 (-) 471 WP_000961392.1 hypothetical protein -
  ASZ86_RS13890 (ASZ86_02770) bioH 2946173..2946895 (-) 723 WP_231967333.1 pimeloyl-ACP methyl ester esterase BioH -
  ASZ86_RS21210 (ASZ86_02771) comF 2946870..2947730 (+) 861 WP_335722511.1 ComF family protein Machinery gene
  ASZ86_RS13910 (ASZ86_02772) nfuA 2947818..2948405 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  ASZ86_RS13915 (ASZ86_02773) nudE 2948544..2949092 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  ASZ86_RS13920 (ASZ86_02774) cysQ 2949115..2949942 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ASZ86_RS13925 (ASZ86_02775) - 2949994..2950752 (-) 759 WP_000817146.1 type II secretion system protein N -
  ASZ86_RS13930 (ASZ86_02776) - 2950754..2951251 (-) 498 WP_000661339.1 type II secretion system protein M -
  ASZ86_RS13935 (ASZ86_02777) gspL 2951261..2952472 (-) 1212 WP_001288747.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32605.51 Da        Isoelectric Point: 8.0883

>NTDB_id=162074 ASZ86_RS21210 WP_335722511.1 2946870..2947730(+) (comF) [Vibrio cholerae strain NCTC9420]
MPQPCTNTRSYPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=162074 ASZ86_RS21210 WP_335722511.1 2946870..2947730(+) (comF) [Vibrio cholerae strain NCTC9420]
ATGCCCCAGCCGTGTACCAATACCAGATCTTACCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCGCTAGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCGACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.65

100

0.997
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment