Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | ASZ85_RS13395 | Genome accession | NZ_CP013317 |
| Coordinates | 2828928..2829446 (-) | Length | 172 a.a. |
| NCBI ID | WP_000792032.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain NCTC5395 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2823928..2834446
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASZ85_RS13380 (ASZ85_02618) | aroB | 2825363..2826448 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| ASZ85_RS13385 (ASZ85_02619) | aroK | 2826476..2827000 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| ASZ85_RS13390 (ASZ85_02620) | pilQ | 2827187..2828902 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| ASZ85_RS13395 (ASZ85_02621) | pilP | 2828928..2829446 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| ASZ85_RS13400 (ASZ85_02622) | pilO | 2829436..2830026 (-) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ASZ85_RS13405 (ASZ85_02623) | pilN | 2830019..2830603 (-) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| ASZ85_RS13410 (ASZ85_02624) | pilM | 2830593..2831609 (-) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| ASZ85_RS13415 (ASZ85_02625) | - | 2831752..2834229 (+) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19084.25 Da Isoelectric Point: 10.0857
>NTDB_id=162021 ASZ85_RS13395 WP_000792032.1 2828928..2829446(-) (pilP) [Vibrio cholerae strain NCTC5395]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=162021 ASZ85_RS13395 WP_000792032.1 2828928..2829446(-) (pilP) [Vibrio cholerae strain NCTC5395]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |