Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   A6L25_RS05230 Genome accession   NZ_CP016652
Coordinates   1022336..1023013 (-) Length   225 a.a.
NCBI ID   WP_002248272.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M08001     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017336..1028013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L25_RS05205 (A6L25_05205) - 1017384..1017812 (+) 429 Protein_960 AzlC family ABC transporter permease -
  A6L25_RS05210 (A6L25_05210) pilX 1019716..1020189 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L25_RS05215 (A6L25_05215) pilK 1020194..1020787 (-) 594 WP_002248275.1 pilus assembly PilX family protein Machinery gene
  A6L25_RS05220 (A6L25_05220) pilJ 1020766..1021704 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L25_RS05225 (A6L25_05225) pilV 1021701..1022312 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Regulator
  A6L25_RS05230 (A6L25_05230) pilH 1022336..1023013 (-) 678 WP_002248272.1 GspH/FimT family pseudopilin Machinery gene
  A6L25_RS05235 (A6L25_05235) dnaB 1023168..1024574 (-) 1407 WP_002248271.1 replicative DNA helicase -
  A6L25_RS05240 (A6L25_05240) - 1024737..1025324 (+) 588 WP_002220670.1 superoxide dismutase -
  A6L25_RS05245 (A6L25_05245) - 1025896..1026405 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  A6L25_RS05250 (A6L25_05250) - 1026737..1027069 (-) 333 WP_002226445.1 hypothetical protein -
  A6L25_RS14610 - 1027114..1027221 (-) 108 Protein_970 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25328.01 Da        Isoelectric Point: 10.0104

>NTDB_id=161586 A6L25_RS05230 WP_002248272.1 1022336..1023013(-) (pilH) [Neisseria meningitidis strain M08001]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTVN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTRRTMCQYK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=161586 A6L25_RS05230 WP_002248272.1 1022336..1023013(-) (pilH) [Neisseria meningitidis strain M08001]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGTCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.259

96

0.809