Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ATE47_RS11845 Genome accession   NZ_CP013293
Coordinates   2560302..2560955 (+) Length   217 a.a.
NCBI ID   WP_062163541.1    Uniprot ID   -
Organism   Chryseobacterium sp. IHB B 17019     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2555302..2565955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATE47_RS11815 (ATE47_11805) aqpZ 2555775..2556509 (+) 735 WP_062163538.1 aquaporin Z -
  ATE47_RS11820 (ATE47_11810) - 2556607..2557152 (-) 546 WP_062162162.1 hypothetical protein -
  ATE47_RS11825 (ATE47_11815) - 2557303..2558283 (-) 981 WP_062162163.1 acyl transferase -
  ATE47_RS11830 (ATE47_11820) - 2558458..2559249 (-) 792 WP_082632577.1 UDP-2,3-diacylglucosamine diphosphatase -
  ATE47_RS11835 (ATE47_11825) queD 2559268..2559714 (-) 447 WP_062162164.1 6-carboxytetrahydropterin synthase QueD -
  ATE47_RS11840 (ATE47_11830) - 2559795..2560184 (-) 390 WP_062163540.1 thioesterase family protein -
  ATE47_RS11845 (ATE47_11835) comF 2560302..2560955 (+) 654 WP_062163541.1 phosphoribosyltransferase family protein Machinery gene
  ATE47_RS11850 (ATE47_11840) - 2561098..2561784 (+) 687 WP_062162165.1 alpha/beta hydrolase -
  ATE47_RS11855 (ATE47_11845) upp 2561852..2562505 (-) 654 WP_062162166.1 uracil phosphoribosyltransferase -
  ATE47_RS11860 (ATE47_11850) der 2562739..2564049 (-) 1311 WP_062162167.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25521.46 Da        Isoelectric Point: 7.0066

>NTDB_id=161572 ATE47_RS11845 WP_062163541.1 2560302..2560955(+) (comF) [Chryseobacterium sp. IHB B 17019]
MILDTFFPNRCIHCNRIIDADLLVCSLCFEQIHFTHFNYFKDNPVKEKCKLLFPVENTFSLMQFEEENLSRKIIHELKYR
NREKTGKIIADWVTEQLDFEDQKPDLMVSVPLHPKKLKERGYNQLHLFTETLSDFYKIPFDHDLITRNHYSKAQALKDKQ
HRLETKNDFSITKNISGKHVLLIDDVFTTGNTLSTIAWEILKAGDNKISVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=161572 ATE47_RS11845 WP_062163541.1 2560302..2560955(+) (comF) [Chryseobacterium sp. IHB B 17019]
ATGATTTTAGATACTTTCTTTCCGAACCGTTGTATCCATTGCAACCGGATTATTGATGCCGACCTGTTGGTCTGCAGTCT
TTGCTTTGAGCAAATTCATTTTACACATTTTAATTATTTTAAAGATAATCCGGTAAAAGAAAAATGTAAACTGCTTTTTC
CTGTTGAAAATACTTTTTCCCTGATGCAATTTGAAGAAGAAAATTTGAGCCGGAAAATCATTCACGAATTAAAATACAGA
AACCGCGAAAAGACCGGAAAAATTATAGCTGATTGGGTAACTGAACAGTTGGATTTTGAAGATCAAAAGCCTGATCTGAT
GGTTTCCGTTCCGCTTCACCCAAAAAAATTGAAGGAAAGAGGCTATAATCAATTGCATCTATTCACCGAAACGTTGTCTG
ATTTTTATAAAATTCCTTTCGATCATGATTTAATTACAAGAAATCATTATTCCAAAGCTCAAGCTTTAAAAGATAAGCAG
CACCGGCTGGAAACAAAAAATGATTTTTCCATCACCAAAAATATATCCGGAAAACATGTTTTGCTGATTGATGATGTTTT
TACAACAGGAAACACTTTGTCTACCATTGCATGGGAAATTTTGAAGGCCGGAGACAATAAAATAAGTGTTCTGGTAATGG
CGATGGATGTTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)

Phosphoribosyl transferase domain (Pribosyltran)

(137-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.852

99.539

0.516

Multiple sequence alignment