Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ATN06_RS22465 Genome accession   NZ_CP013274
Coordinates   4302689..4305028 (-) Length   779 a.a.
NCBI ID   WP_060632371.1    Uniprot ID   A0A243GE26
Organism   Bacillus thuringiensis strain CTC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4297689..4310028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS22440 (ATN06_22215) - 4298014..4298190 (-) 177 WP_048531368.1 hypothetical protein -
  ATN06_RS29270 - 4298313..4298450 (-) 138 WP_176225752.1 hypothetical protein -
  ATN06_RS22445 (ATN06_22220) - 4298450..4299145 (-) 696 WP_060632369.1 alpha/beta fold hydrolase -
  ATN06_RS22450 (ATN06_22225) - 4299277..4299717 (-) 441 WP_001266956.1 D-tyrosyl-tRNA(Tyr) deacylase -
  ATN06_RS22455 (ATN06_22230) relA 4299735..4301918 (-) 2184 WP_060632370.1 GTP diphosphokinase -
  ATN06_RS22460 (ATN06_22235) - 4302129..4302641 (-) 513 WP_000346215.1 adenine phosphoribosyltransferase -
  ATN06_RS22465 (ATN06_22240) recJ 4302689..4305028 (-) 2340 WP_060632371.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ATN06_RS22470 (ATN06_22245) - 4305130..4306023 (-) 894 WP_060632372.1 cation diffusion facilitator family transporter -
  ATN06_RS22475 (ATN06_22250) secDF 4306175..4308439 (-) 2265 WP_060632373.1 protein translocase subunit SecDF -
  ATN06_RS22480 (ATN06_22255) - 4308709..4308993 (-) 285 WP_000884549.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 779 a.a.        Molecular weight: 87987.53 Da        Isoelectric Point: 4.8944

>NTDB_id=161295 ATN06_RS22465 WP_060632371.1 4302689..4305028(-) (recJ) [Bacillus thuringiensis strain CTC]
MLQPKTRWKEKEYNGERVSELASKLQLSPLVVSLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGADVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GVDLIITDHHEPPPELPEAFAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDAAPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAMAEVETNFPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLCIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNEQAELILTEEDFIPITAVDAFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRIAVKDAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKEISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVDAWQLFDWRSMRNVEANVAELPKEKITMVYFSEEVLNKFSLEDYKDHIMHASEVTELNDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLSQKAPFSLRQYGAQLCQHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMADKKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHKEVEQLG

Nucleotide


Download         Length: 2340 bp        

>NTDB_id=161295 ATN06_RS22465 WP_060632371.1 4302689..4305028(-) (recJ) [Bacillus thuringiensis strain CTC]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGGCGAGCGAGTGAGTGAATTAGCAAGTAAATTACAATT
ATCACCACTTGTCGTTTCGTTATTCCTCGGTAGAGGACTAGATACTGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCATGATCCATTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGACTACGATGCGGACGGAGTAAGTAGTACGACTGTGTTATATCTTGCCTTGCAAGAATT
GGGTGCAGATGTAGAATTTTATATTCCAAATCGTTTTACAGAAGGTTATGGACCGAACGAAGAAGCATTTCGTTGGGCGC
ATAGCGCAGGATTCTCGCTAATTATTACTGTCGATACTGGTATCGCGGCAGTACATGAAGCGAAGGTAGCGAAGGAGCTC
GGAGTAGATCTTATTATTACAGATCACCATGAGCCACCACCAGAATTGCCAGAAGCATTTGCGATTATTCATCCGAAATT
AGATGGCGGTGTGTATCCATTTCACTATTTAGCTGGTGTAGGTGTTGCGTTTAAAGTTGCGCATGCACTACTGGGCCGTG
TACCAGAACATTTATTAGAAATTGCGGTAATTGGTACGGTAGCCGATTTAGTATCACTTCATGGTGAGAATAGATTGCTA
GTGAAACGCGGTTTAAAACATATGCGTATGACGAAAAATATCGGACTAAAGGCGTTATTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAGAGTATTGGCTTCTCAATCGCACCACGTATTAATGCAGTTGGACGTTTAGAAGATGCAGCGC
CTGCTGTACATCTTTTATTATCAGATGATCCAGAAGAAGCGAAAGAGCTGGCTGAAGAAATTGATGAGCTGAACAAACTG
CGAAAAGATATTGTAAAGCAAATTACAGAAGAAGCTATGGCTGAAGTGGAAACTAATTTCCCGCCTGAAGAAAATAAAGT
ATTAGTGCTTGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTTGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACGATTGTATTATGCATTGATCCTGTAAAAGAAACTGCAAAAGGTTCAGCACGTAGTATTGCAGGATTCGATTTGTTT
GCAAACTTGTCAGATTGTAGAGAGTTATTGCCACACTTCGGAGGGCATCCGATGGCAGCTGGAATGACGCTACATATGAA
TGATGTAGATGAATTACGCCGTCGCTTAAATGAGCAAGCAGAGTTAATTTTAACAGAAGAAGATTTTATTCCGATTACAG
CTGTTGATGCTTTTTGTAAAGTGGAGGACGTAACACTTGCAGCAATTGAGGATATGCAAAAGTTGGCGCCATTTGGTGTT
GGAAATCCGAAACCACGTATTGCAGTGAAAGATGCAGAGCTAGAAAGTATTCGTGCAATCGGATCAGACGGTTCTCATTT
GAAAATGGCTCTTCGCGATGGACAAGCAACACTGGATACAATCGGATTTGGTTTTGGTGCGTATGCGAAAGAAATTTCTC
CAGTTGCAAAGGTATCTGTAATAGGGGAAGCGTCTATCAATGAATGGAATAATTTTAAGAAGCCACAATTAATGGTACAA
GATATTGCTGTAGACGCATGGCAATTATTTGATTGGCGTAGTATGCGTAACGTAGAAGCAAATGTAGCAGAACTTCCGAA
AGAAAAAATAACAATGGTGTATTTTTCTGAAGAGGTATTGAATAAATTTTCTTTAGAAGACTATAAAGATCATATTATGC
ATGCATCAGAAGTAACTGAGTTAAATGATCAATACATCGTGTTACTTGATTTGCCAAAAGGAACAGATGAATTACGGGAT
CTATTTAAAGTGGGATTCCCGTCGCGAATTTATACACTATTTTATCAAGAGAATAATCATTTATTTAGTACTGTTCCAAC
GAGAGAACACTTTAAATGGTACTATTCGTTCTTGAGCCAAAAAGCACCATTTTCTTTAAGACAATATGGAGCACAACTAT
GTCAACATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GATGGCGTCATTTTTATGGCAGACAAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAG
AAGTAGAACAGTTAGGGTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243GE26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.455

99.358

0.521

Multiple sequence alignment