Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ATN06_RS22385 Genome accession   NZ_CP013274
Coordinates   4284780..4287116 (-) Length   778 a.a.
NCBI ID   WP_000528089.1    Uniprot ID   A0A243GFB9
Organism   Bacillus thuringiensis strain CTC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4279780..4292116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS22360 (ATN06_22135) - 4282442..4282786 (+) 345 WP_060632360.1 PH domain-containing protein -
  ATN06_RS22365 (ATN06_22140) - 4282825..4283892 (-) 1068 WP_060632361.1 AI-2E family transporter -
  ATN06_RS22370 (ATN06_22145) - 4284069..4284281 (+) 213 WP_060632362.1 hypothetical protein -
  ATN06_RS22375 (ATN06_22150) - 4284317..4284445 (-) 129 WP_001053553.1 YrzQ family protein -
  ATN06_RS22380 (ATN06_22155) - 4284464..4284652 (-) 189 WP_000469281.1 hypothetical protein -
  ATN06_RS22385 (ATN06_22160) recD2 4284780..4287116 (-) 2337 WP_000528089.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ATN06_RS22390 (ATN06_22165) - 4287213..4287872 (-) 660 WP_060632363.1 tetratricopeptide repeat protein -
  ATN06_RS22395 (ATN06_22170) mnmA 4287983..4289098 (-) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  ATN06_RS22400 (ATN06_22175) - 4289115..4290260 (-) 1146 WP_060632364.1 cysteine desulfurase family protein -
  ATN06_RS22405 (ATN06_22180) cymR 4290296..4290712 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87387.85 Da        Isoelectric Point: 5.2015

>NTDB_id=161294 ATN06_RS22385 WP_000528089.1 4284780..4287116(-) (recD2) [Bacillus thuringiensis strain CTC]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=161294 ATN06_RS22385 WP_000528089.1 4284780..4287116(-) (recD2) [Bacillus thuringiensis strain CTC]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTCGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTCAACAAACAAAAAGCGCAGGAAATATATGAGACAATTGTTGAGCATCAAGGGCTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACATTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGCTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAGGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAATCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTGCCATCTGTAGGACCTGGTCAAGTATTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTAATTCAACTTGCCCATGCGATAAAAAACGGCACGCTTCCGCCAG
ATTTGGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCCCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCCGGTATTAA
TGTACTAAACGAAGCTTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGACGAGGCGATAAAGTCTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGTGAAATTGTT
TCAGTGTTTTATGCGAAAGAGAACGTGGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAGCCGGATTTAAATCAAATTACACATGCGTATTGTTGTTCGATTCATAAATCGCAAGGTAGTGAATTTCCGATTGTGA
TTATGCCAATTGTAAAAAGTTACAACCGCATGTTACGTCGTAATTTAATTTACACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGTGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTCGTTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243GFB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58

Multiple sequence alignment