Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | ATN06_RS19460 | Genome accession | NZ_CP013274 |
| Coordinates | 3764120..3764899 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus thuringiensis strain CTC | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3718103..3799015 | 3764120..3764899 | within | 0 |
Gene organization within MGE regions
Location: 3718103..3799015
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATN06_RS19225 (ATN06_18995) | - | 3719332..3719535 (-) | 204 | WP_060631959.1 | YlzJ-like family protein | - |
| ATN06_RS19230 (ATN06_19000) | tepA | 3719532..3720281 (-) | 750 | WP_060631960.1 | translocation-enhancing protein TepA | - |
| ATN06_RS19235 (ATN06_19005) | - | 3720385..3722055 (-) | 1671 | WP_060631961.1 | ribonuclease J | - |
| ATN06_RS19245 (ATN06_19015) | dapA | 3722830..3723708 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| ATN06_RS19250 (ATN06_19020) | dapG | 3723720..3724952 (-) | 1233 | WP_060631962.1 | aspartate kinase | - |
| ATN06_RS19255 (ATN06_19025) | asd | 3724976..3726022 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| ATN06_RS19260 (ATN06_19030) | spoVFB | 3726173..3726367 (-) | 195 | Protein_3694 | dipicolinate synthase subunit B | - |
| ATN06_RS19265 (ATN06_19035) | - | 3726635..3727222 (+) | 588 | WP_060631963.1 | hypothetical protein | - |
| ATN06_RS19270 (ATN06_19040) | - | 3727264..3728016 (-) | 753 | Protein_3696 | N-acetylmuramoyl-L-alanine amidase | - |
| ATN06_RS19275 (ATN06_19045) | - | 3728016..3728441 (-) | 426 | WP_060631964.1 | phage holin family protein | - |
| ATN06_RS19280 (ATN06_19050) | - | 3728674..3729018 (+) | 345 | WP_060631965.1 | hypothetical protein | - |
| ATN06_RS29825 | - | 3729077..3729142 (-) | 66 | WP_369596996.1 | hypothetical protein | - |
| ATN06_RS19285 (ATN06_19055) | - | 3729190..3729348 (-) | 159 | Protein_3700 | ArpU family transcriptional regulator | - |
| ATN06_RS19290 (ATN06_19060) | - | 3729705..3730691 (+) | 987 | WP_060631966.1 | S-layer homology domain-containing protein | - |
| ATN06_RS29265 (ATN06_19065) | - | 3730868..3731081 (+) | 214 | Protein_3702 | hypothetical protein | - |
| ATN06_RS19300 (ATN06_19070) | - | 3731173..3731451 (-) | 279 | WP_060631967.1 | hypothetical protein | - |
| ATN06_RS29830 (ATN06_19075) | - | 3731448..3732583 (-) | 1136 | Protein_3704 | lipase family protein | - |
| ATN06_RS19315 (ATN06_19085) | - | 3733174..3733491 (+) | 318 | WP_060631968.1 | hypothetical protein | - |
| ATN06_RS29530 | - | 3733834..3734028 (-) | 195 | Protein_3706 | cell division protein SepF | - |
| ATN06_RS19320 (ATN06_19090) | - | 3734107..3734340 (-) | 234 | WP_088116282.1 | hypothetical protein | - |
| ATN06_RS19325 (ATN06_19095) | - | 3734513..3736060 (+) | 1548 | WP_060631970.1 | recombinase family protein | - |
| ATN06_RS19330 (ATN06_19100) | dpaB | 3736093..3736518 (-) | 426 | Protein_3709 | dipicolinate synthase subunit B | - |
| ATN06_RS19335 (ATN06_19105) | dpaA | 3736515..3737417 (-) | 903 | WP_060631971.1 | dipicolinic acid synthetase subunit A | - |
| ATN06_RS19340 (ATN06_19110) | - | 3737691..3737942 (-) | 252 | WP_060631972.1 | YlmC/YmxH family sporulation protein | - |
| ATN06_RS19345 (ATN06_19115) | - | 3738073..3739314 (-) | 1242 | WP_000592989.1 | M16 family metallopeptidase | - |
| ATN06_RS19350 (ATN06_19120) | - | 3739401..3740300 (-) | 900 | WP_060631973.1 | polysaccharide deacetylase family protein | - |
| ATN06_RS19355 (ATN06_19125) | pnp | 3740452..3742590 (-) | 2139 | WP_060631974.1 | polyribonucleotide nucleotidyltransferase | - |
| ATN06_RS19360 (ATN06_19130) | rpsO | 3742751..3743020 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| ATN06_RS19365 (ATN06_19135) | ribF | 3743121..3744092 (-) | 972 | WP_060631975.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| ATN06_RS19370 (ATN06_19140) | truB | 3744136..3745059 (-) | 924 | WP_060631976.1 | tRNA pseudouridine(55) synthase TruB | - |
| ATN06_RS19375 (ATN06_19145) | rbfA | 3745146..3745502 (-) | 357 | WP_000776441.1 | 30S ribosome-binding factor RbfA | - |
| ATN06_RS19380 (ATN06_19150) | - | 3745518..3745799 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| ATN06_RS19385 (ATN06_19155) | infB | 3745796..3747856 (-) | 2061 | WP_060631977.1 | translation initiation factor IF-2 | - |
| ATN06_RS19390 (ATN06_19160) | - | 3747861..3748172 (-) | 312 | WP_001286522.1 | YlxQ family RNA-binding protein | - |
| ATN06_RS19395 (ATN06_19165) | rnpM | 3748173..3748445 (-) | 273 | WP_000071125.1 | RNase P modulator RnpM | - |
| ATN06_RS19400 (ATN06_19170) | nusA | 3748457..3749563 (-) | 1107 | WP_000102598.1 | transcription termination factor NusA | - |
| ATN06_RS19405 (ATN06_19175) | rimP | 3749581..3750051 (-) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
| ATN06_RS19410 (ATN06_19180) | - | 3750385..3754686 (-) | 4302 | WP_060631978.1 | PolC-type DNA polymerase III | - |
| ATN06_RS19415 (ATN06_19185) | - | 3754811..3756511 (-) | 1701 | WP_060631979.1 | proline--tRNA ligase | - |
| ATN06_RS19420 (ATN06_19190) | rseP | 3756620..3757876 (-) | 1257 | WP_060631980.1 | RIP metalloprotease RseP | - |
| ATN06_RS19425 (ATN06_19195) | dxr | 3757893..3759035 (-) | 1143 | WP_000790363.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| ATN06_RS19430 (ATN06_19200) | cdsA | 3759059..3759850 (-) | 792 | WP_060631981.1 | phosphatidate cytidylyltransferase | - |
| ATN06_RS19435 (ATN06_19205) | uppS | 3759868..3760644 (-) | 777 | WP_060631982.1 | isoprenyl transferase | - |
| ATN06_RS19440 (ATN06_19210) | frr | 3760730..3761287 (-) | 558 | WP_000531504.1 | ribosome recycling factor | - |
| ATN06_RS19445 (ATN06_19215) | pyrH | 3761290..3762012 (-) | 723 | WP_060631983.1 | UMP kinase | - |
| ATN06_RS19450 (ATN06_19220) | tsf | 3762079..3762966 (-) | 888 | WP_060631984.1 | translation elongation factor Ts | - |
| ATN06_RS19455 (ATN06_19225) | rpsB | 3763070..3763771 (-) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| ATN06_RS19460 (ATN06_19230) | codY | 3764120..3764899 (-) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| ATN06_RS19465 (ATN06_19235) | hslU | 3764977..3766368 (-) | 1392 | WP_060631985.1 | ATP-dependent protease ATPase subunit HslU | - |
| ATN06_RS19470 (ATN06_19240) | hslV | 3766391..3766933 (-) | 543 | WP_000526271.1 | ATP-dependent protease proteolytic subunit HslV | - |
| ATN06_RS19475 (ATN06_19245) | xerC | 3766976..3767875 (-) | 900 | WP_060631986.1 | tyrosine recombinase XerC | - |
| ATN06_RS19480 (ATN06_19250) | trmFO | 3767941..3769245 (-) | 1305 | WP_060631987.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| ATN06_RS19485 (ATN06_19255) | topA | 3769294..3771378 (-) | 2085 | WP_060631988.1 | type I DNA topoisomerase | - |
| ATN06_RS19490 (ATN06_19260) | dprA | 3771523..3772392 (-) | 870 | WP_060631989.1 | DNA-processing protein DprA | - |
| ATN06_RS19495 (ATN06_19265) | sucD | 3772480..3773382 (-) | 903 | WP_000115179.1 | succinate--CoA ligase subunit alpha | - |
| ATN06_RS19500 (ATN06_19270) | sucC | 3773402..3774562 (-) | 1161 | WP_001020788.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ATN06_RS19505 (ATN06_19275) | rnhB | 3774756..3775529 (-) | 774 | WP_060631990.1 | ribonuclease HII | - |
| ATN06_RS19510 (ATN06_19280) | ylqF | 3775581..3776471 (-) | 891 | WP_060631991.1 | ribosome biogenesis GTPase YlqF | - |
| ATN06_RS19515 (ATN06_19285) | lepB | 3776492..3777043 (-) | 552 | WP_060631992.1 | signal peptidase I | - |
| ATN06_RS19520 (ATN06_19290) | rplS | 3777145..3777489 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| ATN06_RS19525 (ATN06_19295) | trmD | 3777636..3778370 (-) | 735 | WP_060631993.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| ATN06_RS19530 (ATN06_19300) | rimM | 3778370..3778885 (-) | 516 | WP_060631994.1 | ribosome maturation factor RimM | - |
| ATN06_RS19535 (ATN06_19305) | - | 3779007..3779234 (-) | 228 | WP_060631995.1 | KH domain-containing protein | - |
| ATN06_RS19540 (ATN06_19310) | rpsP | 3779249..3779521 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| ATN06_RS19545 (ATN06_19315) | ffh | 3779623..3780972 (-) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| ATN06_RS19550 (ATN06_19320) | - | 3780985..3781317 (-) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| ATN06_RS19555 (ATN06_19325) | ftsY | 3781451..3782440 (-) | 990 | WP_060631996.1 | signal recognition particle-docking protein FtsY | - |
| ATN06_RS19560 (ATN06_19330) | smc | 3782456..3786025 (-) | 3570 | WP_060631997.1 | chromosome segregation protein SMC | - |
| ATN06_RS19565 (ATN06_19335) | rncS | 3786173..3786910 (-) | 738 | WP_060631998.1 | ribonuclease III | - |
| ATN06_RS19570 (ATN06_19340) | acpP | 3786969..3787202 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| ATN06_RS19575 (ATN06_19345) | fabG | 3787272..3788012 (-) | 741 | WP_060631999.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| ATN06_RS19580 (ATN06_19350) | fabD | 3788012..3788956 (-) | 945 | WP_060632000.1 | ACP S-malonyltransferase | - |
| ATN06_RS19585 (ATN06_19355) | plsX | 3788971..3789963 (-) | 993 | WP_000684108.1 | phosphate acyltransferase PlsX | - |
| ATN06_RS19590 (ATN06_19360) | fapR | 3789960..3790553 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| ATN06_RS19595 (ATN06_19365) | recG | 3790642..3792690 (-) | 2049 | WP_060632001.1 | ATP-dependent DNA helicase RecG | - |
| ATN06_RS19600 (ATN06_19370) | - | 3792990..3794666 (-) | 1677 | WP_060632002.1 | DAK2 domain-containing protein | - |
| ATN06_RS19605 (ATN06_19375) | - | 3794689..3795051 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| ATN06_RS19610 (ATN06_19380) | rpmB | 3795428..3795616 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| ATN06_RS19615 (ATN06_19385) | spoVM | 3795690..3795770 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| ATN06_RS19620 (ATN06_19390) | - | 3795837..3796517 (-) | 681 | WP_060632003.1 | thiamine diphosphokinase | - |
| ATN06_RS19625 (ATN06_19395) | rpe | 3796618..3797262 (-) | 645 | WP_060632004.1 | ribulose-phosphate 3-epimerase | - |
| ATN06_RS19630 (ATN06_19400) | rsgA | 3797265..3798146 (-) | 882 | WP_060632005.1 | ribosome small subunit-dependent GTPase A | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=161286 ATN06_RS19460 WP_000421290.1 3764120..3764899(-) (codY) [Bacillus thuringiensis strain CTC]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=161286 ATN06_RS19460 WP_000421290.1 3764120..3764899(-) (codY) [Bacillus thuringiensis strain CTC]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACACAAAGCTTATTC
AACATTACAGAAACATCTTCTAACTTAGATGTAAACAGTGCTTACACAGCATTCCCGGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTGTCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGATTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACACAAAGCTTATTC
AACATTACAGAAACATCTTCTAACTTAGATGTAAACAGTGCTTACACAGCATTCCCGGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTGTCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGATTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |