Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FORC22_RS00700 Genome accession   NZ_CP013248
Coordinates   148756..149481 (-) Length   241 a.a.
NCBI ID   WP_031414552.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_022     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143756..154481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC22_RS00675 (FORC22_0125) - 144876..145367 (+) 492 WP_005458943.1 type II secretion system protein M -
  FORC22_RS00680 (FORC22_0126) - 145369..146130 (+) 762 WP_071651741.1 type II secretion system protein N -
  FORC22_RS00685 (FORC22_0127) cysQ 146416..147243 (-) 828 WP_071651742.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  FORC22_RS00690 (FORC22_0128) nudE 147284..147853 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  FORC22_RS00695 (FORC22_0129) nfuA 148074..148658 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  FORC22_RS00700 (FORC22_0130) comF 148756..149481 (-) 726 WP_031414552.1 amidophosphoribosyltransferase Machinery gene
  FORC22_RS00705 (FORC22_0131) bioH 149566..150333 (+) 768 WP_071652489.1 pimeloyl-ACP methyl ester esterase BioH -
  FORC22_RS00710 (FORC22_0132) - 150457..150921 (+) 465 WP_071651743.1 ATP-dependent Lon protease -
  FORC22_RS00715 (FORC22_0133) - 151057..153378 (-) 2322 WP_071651744.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27648.82 Da        Isoelectric Point: 9.1620

>NTDB_id=161167 FORC22_RS00700 WP_031414552.1 148756..149481(-) (comF) [Vibrio parahaemolyticus strain FORC_022]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCGHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=161167 FORC22_RS00700 WP_031414552.1 148756..149481(-) (comF) [Vibrio parahaemolyticus strain FORC_022]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGGTCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment