Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   APQ13_RS03575 Genome accession   NZ_CP013237
Coordinates   737516..739270 (-) Length   584 a.a.
NCBI ID   WP_002263294.1    Uniprot ID   A0AAX1K4F0
Organism   Streptococcus mutans strain NG8 isolate Dental Plaque     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 737516..786867 737516..739270 within 0


Gene organization within MGE regions


Location: 737516..786867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ13_RS03575 (APQ13_03570) rcrQ 737516..739270 (-) 1755 WP_002263294.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS03580 (APQ13_03575) rcrP 739260..741062 (-) 1803 WP_002263293.1 ABC transporter ATP-binding protein Regulator
  APQ13_RS03585 (APQ13_03580) rcrR 741066..741500 (-) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  APQ13_RS03590 (APQ13_03585) queC 742052..742705 (+) 654 WP_002263291.1 7-cyano-7-deazaguanine synthase QueC -
  APQ13_RS03595 (APQ13_03590) queD 742705..743151 (+) 447 WP_002263290.1 6-carboxytetrahydropterin synthase QueD -
  APQ13_RS03600 (APQ13_03595) queE 743148..743864 (+) 717 WP_002263289.1 7-carboxy-7-deazaguanine synthase QueE -
  APQ13_RS03605 (APQ13_03600) queF 743877..744365 (+) 489 WP_002265143.1 preQ(1) synthase -
  APQ13_RS03610 (APQ13_03605) - 744474..744857 (+) 384 WP_002265142.1 DUF3021 family protein -
  APQ13_RS03615 (APQ13_03610) gdhA 744969..746318 (-) 1350 WP_002263849.1 NADP-specific glutamate dehydrogenase -
  APQ13_RS03620 (APQ13_03615) - 747013..747519 (+) 507 WP_002266553.1 DUF308 domain-containing protein -
  APQ13_RS03625 (APQ13_03620) gtfD 747742..752130 (-) 4389 WP_002289671.1 glucosyltransferase-S -
  APQ13_RS03630 (APQ13_03625) - 752351..753271 (-) 921 WP_002289669.1 AEC family transporter -
  APQ13_RS03635 (APQ13_03630) - 753388..755160 (-) 1773 WP_002289667.1 ABC transporter ATP-binding protein -
  APQ13_RS03640 (APQ13_03635) - 755171..756907 (-) 1737 WP_002289665.1 ABC transporter ATP-binding protein -
  APQ13_RS03650 (APQ13_03645) - 757363..759231 (-) 1869 WP_002289664.1 ABC-F family ATP-binding cassette domain-containing protein -
  APQ13_RS03655 (APQ13_03650) - 759234..760439 (-) 1206 WP_002289663.1 CCA tRNA nucleotidyltransferase -
  APQ13_RS03660 (APQ13_03655) dapB 760436..761203 (-) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  APQ13_RS03665 (APQ13_03660) - 761215..762060 (-) 846 WP_002266545.1 DegV family protein -
  APQ13_RS03670 (APQ13_03665) - 762066..762440 (-) 375 WP_002262891.1 DUF1149 family protein -
  APQ13_RS03675 (APQ13_03670) - 762549..764090 (-) 1542 WP_002274053.1 hypothetical protein -
  APQ13_RS10490 (APQ13_03675) - 764077..764793 (-) 717 Protein_731 ABC transporter ATP-binding protein -
  APQ13_RS03685 (APQ13_03680) - 764868..765473 (-) 606 WP_002274052.1 TetR/AcrR family transcriptional regulator -
  APQ13_RS03690 (APQ13_03685) - 765636..766139 (-) 504 WP_002289658.1 phosphatase PAP2 family protein -
  APQ13_RS03695 (APQ13_03690) - 766381..767460 (-) 1080 WP_002271491.1 serine hydrolase domain-containing protein -
  APQ13_RS03700 (APQ13_03695) galE 767726..768727 (-) 1002 WP_002289656.1 UDP-glucose 4-epimerase GalE -
  APQ13_RS03705 (APQ13_03700) galT 768876..770351 (-) 1476 WP_002289654.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  APQ13_RS03710 (APQ13_03705) - 770356..771528 (-) 1173 WP_002289653.1 galactokinase -
  APQ13_RS03715 (APQ13_03710) - 771671..772669 (+) 999 WP_002289652.1 LacI family DNA-binding transcriptional regulator -
  APQ13_RS03720 (APQ13_03715) dexB 772831..774441 (-) 1611 WP_002272969.1 glucan 1,6-alpha-glucosidase DexB -
  APQ13_RS03725 (APQ13_03720) - 774532..775665 (-) 1134 WP_002269398.1 ABC transporter ATP-binding protein -
  APQ13_RS03730 (APQ13_03725) gtfA 775680..777125 (-) 1446 WP_002266725.1 sucrose phosphorylase -
  APQ13_RS03735 (APQ13_03730) - 777321..778154 (-) 834 WP_002262874.1 carbohydrate ABC transporter permease -
  APQ13_RS03740 (APQ13_03735) - 778169..779041 (-) 873 WP_002262873.1 carbohydrate ABC transporter permease -
  APQ13_RS03745 (APQ13_03740) msmE 779054..780316 (-) 1263 WP_002272970.1 sugar-binding protein MsmE -
  APQ13_RS03750 (APQ13_03745) - 780329..782491 (-) 2163 WP_002275444.1 alpha-galactosidase -
  APQ13_RS03755 (APQ13_03750) - 782599..783435 (+) 837 Protein_746 AraC family transcriptional regulator -
  APQ13_RS03760 (APQ13_03755) - 783798..784118 (+) 321 WP_002289888.1 transposase -
  APQ13_RS03765 (APQ13_03760) - 784231..784971 (+) 741 WP_154640496.1 IS3 family transposase -
  APQ13_RS03770 (APQ13_03765) - 785011..786867 (-) 1857 WP_002267226.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64590.66 Da        Isoelectric Point: 6.0636

>NTDB_id=160971 APQ13_RS03575 WP_002263294.1 737516..739270(-) (rcrQ) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MENKKKSLLSQMAPYLKGYKALFGLAVIFTIVSSTITVIGPDRLKEMTDTMTKGLAGKIDLDKIGEIALTLALLYFAGAL
VSYTASFIVSTLIQKFSQRLRNAIADKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAIILLIGSIFMM
IKTNGALAATAILSVFAGFVLSTVIMAKSQPLFKKQQANLADVSGYVEEVYSGHNVVSSYNAIQQSKKQFENLNDQLFAS
MWKSQFFSGIMMPLMQFIGNFGYVMVCIVGATMAINGDITMGTIVAFMTYVRIFTQPIAQIAQGITQLQSANAAMGRVFE
FLDEEEIEDENHKVKQLEKVEGNVNFDNVFFGYSPDKTIIHDFSAHAKAGQKIAIVGPTGAGKTTIVNLLMRFYEVDRGM
ISIDGVNIHDMTRKEVHDAFAMVLQDTWLFEGTVKENLIYNQKHITDEQVIAAAKAVGVHHFIKTLPKGYDTVLDDSVTL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQRAMDHLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGS
HDQLMAENGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=160971 APQ13_RS03575 WP_002263294.1 737516..739270(-) (rcrQ) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGGAAAATAAGAAGAAATCATTATTAAGCCAAATGGCTCCTTACCTTAAAGGCTATAAGGCTTTATTTGGACTTGCTGT
CATTTTTACTATCGTTTCAAGTACGATTACTGTTATTGGACCTGACCGGCTGAAAGAGATGACAGATACCATGACCAAAG
GGCTGGCAGGAAAAATTGATTTAGATAAAATCGGTGAGATTGCTCTAACCTTGGCTCTCTTATACTTTGCTGGTGCTTTG
GTTTCTTATACTGCTAGCTTTATTGTGTCCACTTTGATTCAAAAGTTTTCGCAACGTCTGCGCAATGCCATTGCAGATAA
AATCAATAAGGTACCGCTCAAATATTTTGACAGCCATTCACAAGGAGATACCTTGTCTCGAGTGACCAATGATGTGGATT
TAATGACACAGTCTTTCAACCAAAGTTTAGTTTCAATGGTAGCAGCTATAATTCTCCTGATTGGCTCTATTTTCATGATG
ATTAAAACCAATGGAGCTCTTGCAGCGACCGCTATTTTGTCTGTTTTTGCTGGTTTTGTGTTATCCACTGTTATCATGGC
CAAGAGCCAGCCGCTTTTTAAAAAGCAACAAGCTAATCTAGCCGATGTCAGCGGTTATGTTGAAGAGGTCTATTCAGGTC
ATAATGTGGTTTCTAGTTACAATGCGATTCAGCAAAGCAAGAAGCAGTTTGAAAACTTGAATGACCAATTATTTGCAAGT
ATGTGGAAATCACAATTCTTTTCTGGAATTATGATGCCCCTTATGCAATTCATCGGAAATTTTGGGTATGTCATGGTCTG
TATTGTCGGTGCTACCATGGCTATTAACGGCGATATTACTATGGGAACGATTGTTGCCTTTATGACTTACGTCCGTATTT
TTACTCAGCCCATTGCGCAGATTGCTCAAGGAATCACTCAATTGCAATCAGCTAATGCTGCTATGGGACGTGTCTTTGAA
TTTCTTGATGAGGAAGAAATAGAAGACGAAAACCATAAAGTTAAACAACTTGAAAAAGTTGAAGGAAATGTTAATTTTGA
CAATGTTTTCTTTGGTTATAGTCCTGATAAAACTATTATTCATGATTTCTCGGCTCATGCTAAGGCTGGTCAAAAAATTG
CTATTGTGGGACCGACTGGTGCGGGTAAGACAACGATTGTTAACTTACTTATGCGTTTCTATGAGGTTGATAGAGGGATG
ATTTCTATTGATGGAGTTAATATCCATGATATGACACGAAAAGAAGTGCATGATGCTTTTGCCATGGTACTCCAAGATAC
TTGGCTCTTTGAAGGTACAGTTAAGGAAAATCTGATTTATAATCAAAAACATATCACTGATGAGCAAGTGATTGCAGCAG
CTAAGGCAGTTGGTGTTCATCATTTCATCAAGACTTTACCTAAGGGTTATGATACTGTTTTAGATGATTCGGTCACCTTA
TCAGTCGGTCAAAAACAACTCTTGACCATTGCACGTGCTCTTCTTAAAGATGCACCGCTTCTGATTCTTGATGAAGCAAC
TTCCTCTGTTGATACTCGTACGGAAGAACTTATTCAAAGGGCTATGGATCATTTGATGGAGGGGCGGACATCATTCGTTA
TTGCCCATCGTCTGTCAACTATTCGCAATGCTGATCTTATTCTTGTCATGAGAGATGGTAATATTATTGAACAAGGCAGC
CATGACCAATTGATGGCAGAAAATGGCTTCTATGCCGATCTCTATAATAGTCAATTTACAGAAGAAGTGGCTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(24-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

100

100

1

Multiple sequence alignment