Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A4W81_RS05950 Genome accession   NZ_CP016465
Coordinates   1166649..1168526 (-) Length   625 a.a.
NCBI ID   WP_011374847.1    Uniprot ID   Q38WI3
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1161649..1173526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS05920 (A4W81_05805) - 1161892..1162515 (+) 624 WP_076632245.1 helix-turn-helix transcriptional regulator -
  A4W81_RS05925 (A4W81_05810) - 1162536..1163332 (+) 797 Protein_1147 pyruvate, water dikinase regulatory protein -
  A4W81_RS05930 (A4W81_05815) - 1163454..1163699 (+) 246 WP_011374843.1 hypothetical protein -
  A4W81_RS05935 (A4W81_05820) - 1163748..1164392 (-) 645 WP_076632243.1 HD domain-containing protein -
  A4W81_RS05940 (A4W81_05825) manA 1164466..1165440 (-) 975 WP_011374845.1 mannose-6-phosphate isomerase, class I -
  A4W81_RS05945 (A4W81_05830) - 1165542..1166551 (-) 1010 Protein_1151 serine hydrolase domain-containing protein -
  A4W81_RS05950 (A4W81_05835) rcrQ 1166649..1168526 (-) 1878 WP_011374847.1 ABC transporter ATP-binding protein Regulator
  A4W81_RS05955 (A4W81_05840) - 1168526..1170255 (-) 1730 Protein_1153 ABC transporter ATP-binding protein -
  A4W81_RS05960 (A4W81_05845) - 1170279..1170923 (-) 645 WP_076632241.1 TetR/AcrR family transcriptional regulator -
  A4W81_RS05965 (A4W81_05850) - 1171129..1171857 (+) 729 WP_076632240.1 ion transporter -
  A4W81_RS05970 (A4W81_05855) - 1172052..1172252 (-) 201 WP_004270328.1 cold-shock protein -
  A4W81_RS05975 (A4W81_05860) - 1172453..1173109 (+) 657 WP_076981379.1 type II CAAX endopeptidase family protein -
  A4W81_RS05980 (A4W81_05865) - 1173130..1173450 (+) 321 WP_076632238.1 hypothetical protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 69669.07 Da        Isoelectric Point: 5.2493

>NTDB_id=160362 A4W81_RS05950 WP_011374847.1 1166649..1168526(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.3]
MAEKAATNRPQGGHGPGRGMGGVVEKPKNFWGTTNRLLKYMSSRLIALVFVIVLAIVSVIFQIRTPKVLGEATTEIFKGV
MKGNAMQKAGIAMDRLPIDFDKIQHIIMTVILMYLASAVFSFLQQFIMTRISQQTVYELRKELKDKMQRVPINYYDTHSN
GDIMSRAINDMDNIASTLQQSLTQMVTSTVTFIGVLWMMLTISWQLTLIALVTIPLSLIVVGIVAPKSQKFFAAQQKSLG
LLNNQIEENFSGQVVLKTFNREQVTIDTFEEQNEKLYKAAWKAQFISGVIMPLMTFVNNLGYVFVAIIGGIRVSHGQVTL
GDMQAFMQYTQQFSQPISQLANLANTIQSTIASAERVFAVLDEEDMSEEPSTVPVVQDDANQLEMEHVEFGYQGKDLLLT
DYNLQVKPGQMIAIVGPTGAGKTTIINLLERFYDVSGGSIKLKGVDTRDMSREELRSHFAMVLQDTWLFTGTIWDNLKYG
NESASDEAILAAAKAAHVDGFVRQLPEGYNTVLNEEASNISQGQRQLLTIARAFVADPDILILDEATSSVDTRTEIHIQH
AMERLLQNRTSFVVAHRLSTIRDADNIIVMNHGSIMETGTHDELMVQDGFYADLYNSQFSGNVEI

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=160362 A4W81_RS05950 WP_011374847.1 1166649..1168526(-) (rcrQ) [Latilactobacillus sakei strain TMW 1.3]
ATGGCAGAAAAAGCAGCAACAAACCGGCCACAAGGTGGTCACGGTCCAGGTCGCGGCATGGGTGGCGTCGTTGAAAAGCC
TAAGAATTTCTGGGGCACAACTAATCGTTTATTGAAATACATGTCGAGCCGTTTAATTGCCTTAGTATTTGTCATTGTTT
TGGCGATTGTCTCCGTTATTTTCCAAATTAGAACGCCCAAAGTTTTAGGGGAAGCAACAACTGAAATCTTTAAAGGGGTG
ATGAAAGGCAATGCCATGCAAAAAGCTGGGATTGCAATGGATCGCTTACCAATTGATTTCGATAAGATTCAACACATTAT
CATGACGGTGATCTTGATGTATCTTGCTTCAGCCGTCTTCAGTTTCTTACAACAATTTATTATGACGCGGATTTCACAAC
AAACCGTCTATGAATTGCGTAAGGAATTGAAAGATAAGATGCAACGAGTGCCAATCAATTATTACGATACCCATTCAAAC
GGGGATATCATGAGTCGTGCGATTAATGATATGGATAATATTGCCAGCACGCTACAACAAAGTTTAACGCAAATGGTGAC
CAGCACGGTAACGTTTATCGGTGTTTTATGGATGATGCTGACGATCAGTTGGCAATTAACGCTGATTGCTTTGGTCACAA
TTCCGTTGAGTTTAATTGTCGTTGGGATTGTCGCACCTAAGTCGCAAAAATTCTTTGCTGCACAACAAAAGAGTTTAGGC
TTATTAAATAATCAAATCGAAGAAAACTTTTCCGGTCAAGTGGTCTTGAAGACCTTTAATCGGGAACAAGTGACGATTGA
TACGTTTGAAGAACAAAATGAAAAGTTGTATAAAGCTGCTTGGAAAGCCCAATTTATCTCTGGGGTGATCATGCCATTGA
TGACTTTCGTCAATAACTTAGGGTACGTCTTCGTTGCGATTATCGGTGGGATTCGCGTCTCACACGGTCAAGTCACATTA
GGGGACATGCAGGCCTTCATGCAATATACACAACAATTCTCACAACCAATCTCACAATTGGCTAACTTGGCAAACACAAT
TCAATCAACGATTGCTTCAGCTGAACGGGTTTTTGCTGTTTTAGATGAAGAAGATATGTCTGAAGAACCTTCAACTGTCC
CAGTTGTGCAAGATGATGCCAACCAATTAGAAATGGAACATGTTGAATTTGGTTACCAAGGCAAGGATCTCTTGTTGACG
GACTATAATTTACAAGTTAAACCGGGCCAAATGATCGCGATTGTTGGTCCTACCGGGGCTGGTAAGACAACTATTATTAA
TTTACTTGAACGTTTCTACGATGTTAGTGGCGGTTCGATTAAATTAAAAGGTGTCGATACCCGTGATATGAGTCGGGAAG
AATTGCGGAGTCATTTTGCGATGGTTCTTCAAGATACTTGGCTATTCACCGGGACGATTTGGGATAACTTGAAGTACGGT
AATGAATCAGCTTCAGACGAAGCGATTTTGGCAGCTGCTAAAGCAGCCCATGTTGATGGCTTTGTTCGTCAATTACCTGA
AGGTTATAACACAGTCTTGAATGAAGAAGCTTCAAATATTTCACAAGGTCAACGGCAATTATTGACGATTGCCCGGGCCT
TTGTGGCCGATCCAGATATCTTAATCTTGGATGAAGCAACCAGTTCTGTTGATACGCGGACTGAAATTCATATCCAACAC
GCAATGGAACGTTTATTGCAAAATCGAACGAGTTTCGTTGTTGCCCATCGTTTATCAACGATTCGGGATGCGGATAATAT
CATTGTGATGAATCACGGTTCAATTATGGAAACCGGCACACATGATGAATTGATGGTTCAAGACGGCTTTTACGCTGATC
TATATAACAGCCAATTCTCAGGGAACGTCGAGATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(399-548)

ABC transporter transmembrane region (ABC_membrane)

(49-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.464

92.48

0.411