Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   A4W81_RS05660 Genome accession   NZ_CP016465
Coordinates   1116004..1117743 (-) Length   579 a.a.
NCBI ID   WP_056946696.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain TMW 1.3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111004..1122743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4W81_RS05640 (A4W81_05535) pdhA 1111030..1112139 (-) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  A4W81_RS05645 (A4W81_05540) - 1112462..1113145 (-) 684 WP_076632424.1 hypothetical protein -
  A4W81_RS05650 (A4W81_05545) def 1113648..1114205 (+) 558 WP_011374787.1 peptide deformylase -
  A4W81_RS05655 (A4W81_05550) rcrQ 1114254..1116017 (-) 1764 WP_076632425.1 ABC transporter ATP-binding protein Regulator
  A4W81_RS05660 (A4W81_05555) rcrP 1116004..1117743 (-) 1740 WP_056946696.1 ABC transporter ATP-binding protein Regulator
  A4W81_RS05665 (A4W81_05560) - 1117771..1118256 (-) 486 WP_011374790.1 hypothetical protein -
  A4W81_RS05670 (A4W81_05565) - 1118453..1118665 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  A4W81_RS05675 (A4W81_05570) - 1118670..1120358 (+) 1689 WP_011374792.1 ribonuclease J -
  A4W81_RS05680 (A4W81_05575) - 1120492..1121460 (+) 969 WP_076632426.1 diacylglycerol kinase family protein -
  A4W81_RS05685 (A4W81_05580) thiW 1121492..1121998 (-) 507 WP_112221005.1 energy coupling factor transporter S component ThiW -
  A4W81_RS05690 (A4W81_05585) tenA 1121991..1122674 (-) 684 WP_011374795.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64667.15 Da        Isoelectric Point: 9.1434

>NTDB_id=160360 A4W81_RS05660 WP_056946696.1 1116004..1117743(-) (rcrP) [Latilactobacillus sakei strain TMW 1.3]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPEGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKDATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=160360 A4W81_RS05660 WP_056946696.1 1116004..1117743(-) (rcrP) [Latilactobacillus sakei strain TMW 1.3]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTACTATTTTGGAATTTTATTTGCGTATTTGGGTTTATTTT
AATTGAACTAGGATTACCAACTTTATTAGGACAAATTATTGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTTGTTATTTCCTTAATTGGCTTGGTGGGGTTAATTGGCCTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACACGTGATATCCGGAACGATATTTTTAAAAAGACGATGCAATTTTCACATCATGAATATGGTGAATT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACTG
GGTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTTATGATTGTGCGGACGAGTCTGTCGTTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTCATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGTGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAACACGGGTCACTT
GGCAGTGGGGACGTTAATTGCCTTTATTGAATACATTTTCCACGTACTATTTTCATTCATGCTCTTCGCAAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCAGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACCACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCAGGGGAAACCGTCGCCTTCATCGGTAGTACGGGGAGTGGTAAAT
CAACCTTAATCCAATTGATTCCACGCTTTTTCGATGTGACACGGGGTCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TATCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCTCAAAAAGCAGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCAACGGATGCTGAATTATGGGATGCTTTAACGATTGCCCAATCCAAAACATTTGTGG
CGGAAAAACCAGAGGGACTCCAAACGTATTTGGCCGAAGGGGGCAACAACTTATCAGGTGGGCAAAAGCAACGGCTAGCG
ATTGCCAGAGCAATTGTTCGTCGGCCAGACATTTACGTCTTTGACGATAGCTTCTCAGCTTTGGATTATCAAACTGATGC
GGCTTTACGGGGCGCTTTAAAATCGATTACGAAAGATGCGACGGTCTTAATTGTCGCCCAACGTGTAGGGACGATTATGA
ATGCGGATCGAATTGTCGTCTTAAATGAAGGCCAAGTTGTGGGCATCGGGACCCACAAGGAATTACTTAAAACAAATGAG
GTTTATCGGGCCATTGCCGCCTCACAGTTATCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.646

100

0.413

Multiple sequence alignment