Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PGS_RS01235 Genome accession   NZ_CP013131
Coordinates   278711..279451 (+) Length   246 a.a.
NCBI ID   WP_005875257.1    Uniprot ID   A0A0E2LU95
Organism   Porphyromonas gingivalis A7A1-28     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273711..284451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS_RS01215 (PGS_00002510) aspS 274152..275915 (-) 1764 WP_058018626.1 aspartate--tRNA ligase -
  PGS_RS11460 - 276101..276286 (-) 186 WP_143733771.1 DUF1661 domain-containing protein -
  PGS_RS01220 (PGS_00002520) ribD 276347..277339 (-) 993 WP_058018627.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  PGS_RS01225 (PGS_00002530) prmC 277364..278245 (+) 882 WP_004583800.1 peptide chain release factor N(5)-glutamine methyltransferase -
  PGS_RS01230 (PGS_00002540) - 278242..278727 (+) 486 WP_058018628.1 regulatory protein RecX -
  PGS_RS01235 (PGS_00002550) comF 278711..279451 (+) 741 WP_005875257.1 ComF family protein Machinery gene
  PGS_RS01240 (PGS_00002560) - 279581..281650 (-) 2070 WP_058018629.1 M13 family metallopeptidase -
  PGS_RS01245 (PGS_00002570) - 281669..282571 (-) 903 WP_039417049.1 nucleotidyltransferase family protein -
  PGS_RS11320 (PGS_00002580) - 282753..282887 (-) 135 WP_004583805.1 hypothetical protein -
  PGS_RS01250 (PGS_00002590) - 282991..283572 (-) 582 WP_004583806.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27475.95 Da        Isoelectric Point: 10.0451

>NTDB_id=160145 PGS_RS01235 WP_005875257.1 278711..279451(+) (comF) [Porphyromonas gingivalis A7A1-28]
MRKTANGTGRHIRLLIRKVLDLFFPRYCPVCDSLLAETEIGVCPRCMVRMPRYIEGMQYGLDRLNGDVYIDALYSLFIFK
EDGGVRPMIHALKYGGYSEIGEMLGRMAGRSYPFLSKDYDLIVPVPLHPRKQRKRGYNQALLIAQGLSRVTGIPVQEGLR
RKVYTDSQTGQSYSERKSAMKGKFALSPNTRVAGIRVLLVDDVLTTGATVQAAAEPLAEAFAAKIGVLVAAVTKRPSNWS
HYSDER

Nucleotide


Download         Length: 741 bp        

>NTDB_id=160145 PGS_RS01235 WP_005875257.1 278711..279451(+) (comF) [Porphyromonas gingivalis A7A1-28]
ATGAGGAAGACAGCTAACGGTACGGGCCGGCATATCCGATTGCTGATTCGTAAGGTGTTGGATCTGTTTTTCCCTCGCTA
TTGTCCTGTATGCGACAGCTTGCTCGCCGAGACGGAGATCGGGGTCTGTCCTCGTTGCATGGTGAGAATGCCACGGTATA
TCGAAGGGATGCAATATGGATTAGATCGTCTGAATGGGGATGTTTATATCGACGCGCTGTACAGCCTTTTTATTTTCAAA
GAGGACGGGGGTGTAAGGCCTATGATACACGCACTAAAATATGGAGGATACAGTGAGATCGGCGAAATGCTCGGACGAAT
GGCCGGCCGATCCTATCCTTTCCTGTCCAAGGATTACGATCTGATAGTGCCGGTTCCTTTACACCCACGCAAACAACGTA
AGCGTGGCTACAATCAGGCACTCCTCATCGCACAGGGATTAAGTCGCGTAACGGGAATACCTGTTCAAGAAGGTTTGCGC
AGAAAGGTATATACGGACAGTCAGACCGGACAGTCCTATTCGGAACGAAAGTCAGCCATGAAAGGGAAGTTTGCCCTCTC
CCCGAATACGCGCGTGGCCGGTATCCGTGTTCTTTTGGTGGACGATGTGCTGACTACCGGAGCTACGGTACAGGCTGCGG
CCGAGCCATTGGCAGAAGCCTTTGCGGCCAAGATCGGTGTACTGGTGGCAGCCGTCACCAAGCGTCCCTCGAATTGGTCT
CATTATTCTGATGAGCGATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E2LU95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Porphyromonas gingivalis W83

100

100

1

Multiple sequence alignment