Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   AR446_RS01515 Genome accession   NZ_CP013034
Coordinates   295405..295920 (+) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290405..300920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS01490 (AR446_01485) - 290861..291199 (+) 339 WP_002777761.1 hypothetical protein -
  AR446_RS01495 (AR446_01490) - 291208..291933 (+) 726 WP_002799735.1 phosphatidate cytidylyltransferase -
  AR446_RS01500 (AR446_01495) dxr 291930..293006 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AR446_RS01505 (AR446_01500) - 293003..294397 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  AR446_RS01510 (AR446_01505) tsaD 294394..295401 (+) 1008 WP_002805380.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AR446_RS01515 (AR446_01510) ctsG 295405..295920 (+) 516 WP_002805379.1 type II secretion system protein Machinery gene
  AR446_RS08990 (AR446_01515) - 295920..297160 (+) 1241 Protein_292 DUF2920 family protein -
  AR446_RS01525 (AR446_01520) - 297197..298719 (+) 1523 Protein_293 motility associated factor glycosyltransferase family protein -
  AR446_RS09470 - 298743..300580 (+) 1838 Protein_294 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=159424 AR446_RS01515 WP_002805379.1 295405..295920(+) (ctsG) [Campylobacter coli strain HC2-48]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=159424 AR446_RS01515 WP_002805379.1 295405..295920(+) (ctsG) [Campylobacter coli strain HC2-48]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778

Multiple sequence alignment