Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   A9P90_RS12010 Genome accession   NZ_CP016214
Coordinates   2622333..2622857 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA121617     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2617333..2627857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9P90_RS11995 (A9P90_11995) aroB 2618449..2619555 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  A9P90_RS12000 (A9P90_12000) aroK 2619605..2620123 (-) 519 WP_003095833.1 shikimate kinase AroK -
  A9P90_RS12005 (A9P90_12005) pilQ 2620135..2622279 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  A9P90_RS12010 (A9P90_12010) comL/pilP 2622333..2622857 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  A9P90_RS12015 (A9P90_12015) pilO 2622854..2623477 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  A9P90_RS12020 (A9P90_12020) pilN 2623474..2624070 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  A9P90_RS12025 (A9P90_12025) pilM 2624070..2625134 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  A9P90_RS12030 (A9P90_12030) - 2625319..2627790 (+) 2472 WP_003103276.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=159293 A9P90_RS12010 WP_003095836.1 2622333..2622857(-) (comL/pilP) [Pseudomonas aeruginosa strain PA121617]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=159293 A9P90_RS12010 WP_003095836.1 2622333..2622857(-) (comL/pilP) [Pseudomonas aeruginosa strain PA121617]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362