Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AP033_RS20435 Genome accession   NZ_CP013014
Coordinates   2369983..2370843 (+) Length   286 a.a.
NCBI ID   WP_001905608.1    Uniprot ID   -
Organism   Vibrio cholerae strain Env-390     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2364983..2375843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AP033_RS16170 (AP033_22130) greB 2365431..2365913 (-) 483 WP_000850492.1 transcription elongation factor GreB -
  AP033_RS16175 (AP033_22131) - 2366156..2368477 (+) 2322 WP_000030101.1 Tex family protein -
  AP033_RS16180 (AP033_22132) - 2368572..2369042 (-) 471 WP_000961393.1 hypothetical protein -
  AP033_RS16185 (AP033_22133) bioH 2369286..2370047 (-) 762 WP_001240446.1 pimeloyl-ACP methyl ester esterase BioH -
  AP033_RS20435 comF 2369983..2370843 (+) 861 WP_001905608.1 ComF family protein Machinery gene
  AP033_RS16195 (AP033_22135) nfuA 2370931..2371518 (+) 588 WP_000070181.1 Fe-S biogenesis protein NfuA -
  AP033_RS16200 (AP033_22136) nudE 2371657..2372205 (+) 549 WP_000095820.1 ADP compounds hydrolase NudE -
  AP033_RS16205 (AP033_22137) cysQ 2372228..2373055 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AP033_RS16210 (AP033_22138) - 2373107..2373865 (-) 759 WP_000817146.1 type II secretion system protein N -
  AP033_RS16215 (AP033_22139) - 2373867..2374364 (-) 498 WP_000661339.1 type II secretion system protein M -
  AP033_RS16220 (AP033_22140) gspL 2374374..2375585 (-) 1212 WP_001288747.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32559.49 Da        Isoelectric Point: 8.0588

>NTDB_id=159224 AP033_RS20435 WP_001905608.1 2369983..2370843(+) (comF) [Vibrio cholerae strain Env-390]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCIGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANMLNVEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=159224 AP033_RS20435 WP_001905608.1 2369983..2370843(+) (comF) [Vibrio cholerae strain Env-390]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGTCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTATCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATATGCTGAACGTTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

99.65

100

0.997
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment