Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | AP033_RS15785 | Genome accession | NZ_CP013014 |
| Coordinates | 2277835..2278353 (-) | Length | 172 a.a. |
| NCBI ID | WP_000792032.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain Env-390 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2272835..2283353
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AP033_RS15770 (AP033_22050) | aroB | 2274270..2275355 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| AP033_RS15775 (AP033_22051) | aroK | 2275383..2275907 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| AP033_RS15780 (AP033_22052) | pilQ | 2276094..2277809 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| AP033_RS15785 (AP033_22053) | pilP | 2277835..2278353 (-) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| AP033_RS15790 (AP033_22054) | pilO | 2278343..2278933 (-) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AP033_RS15795 (AP033_22055) | pilN | 2278926..2279510 (-) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| AP033_RS15800 (AP033_22056) | pilM | 2279500..2280516 (-) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| AP033_RS15805 (AP033_22057) | - | 2280664..2283141 (+) | 2478 | WP_000668743.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19084.25 Da Isoelectric Point: 10.0857
>NTDB_id=159211 AP033_RS15785 WP_000792032.1 2277835..2278353(-) (pilP) [Vibrio cholerae strain Env-390]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=159211 AP033_RS15785 WP_000792032.1 2277835..2278353(-) (pilP) [Vibrio cholerae strain Env-390]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |